View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10479_high_7 (Length: 247)
Name: NF10479_high_7
Description: NF10479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10479_high_7 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 32375618 - 32375372
Alignment:
| Q |
1 |
acattgcagataacattgacaaaattgataacagaacacctttaggtccttacacaactcaattgattgagtataaacccttttgggaggaaaaagaaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32375618 |
acattgcagataacattgacaaaattgataacagaacacctttaggtccttacacaactcaattgattgagtataaacctttttgggaggaaaaagaaaa |
32375519 |
T |
|
| Q |
101 |
agatgatgatttagaagcttgggttgaacatgttcgaatcacgaaagtgcaaaagaagaaattacttatagccgcgaatcatttcaatagagataataaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32375518 |
agatgatgatttagaagcttgggttgaacatgttcgaatcacgaaagtgcaaaagaagaaattacttatagccgcgaatcatttcaatagagataataaa |
32375419 |
T |
|
| Q |
201 |
aagggtttagagtacttgaagcatgctaagttaatctctgctcctcc |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
32375418 |
aagggtttagagtacttgaagcatgctaagttaatctccgatcctcc |
32375372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University