View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10479_low_11 (Length: 242)
Name: NF10479_low_11
Description: NF10479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10479_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 107 - 224
Target Start/End: Original strand, 38342034 - 38342151
Alignment:
| Q |
107 |
ttagttagttagtactatatatcatagtttacacgtaaaagtaacaatattggtgatatgcattgcaatattaatgggataagttatatagtttatatag |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38342034 |
ttagttagttagtactatatatcatagtttacacgtaaaagtaacaatattggtgatatgcattgcaatattaatgggataagttatatagtttatatag |
38342133 |
T |
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| Q |
207 |
gttaaaacactctctaat |
224 |
Q |
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|||||||||||||||||| |
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| T |
38342134 |
gttaaaacactctctaat |
38342151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 107 - 224
Target Start/End: Original strand, 38446227 - 38446344
Alignment:
| Q |
107 |
ttagttagttagtactatatatcatagtttacacgtaaaagtaacaatattggtgatatgcattgcaatattaatgggataagttatatagtttatatag |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38446227 |
ttagttagttagtactatatatcatagtttacacgtaaaagtaacaatattggtgatatgcattgcaatattaatgggataagttatatagtttatatag |
38446326 |
T |
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| Q |
207 |
gttaaaacactctctaat |
224 |
Q |
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|||||||||||||||||| |
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| T |
38446327 |
gttaaaacactctctaat |
38446344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 38341925 - 38341973
Alignment:
| Q |
1 |
tttaaatttccatctacaattgtttaaactgaatcctagttaattcaag |
49 |
Q |
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||||||||||||| || ||||||||||| |||||||||||||||||||| |
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| T |
38341925 |
tttaaatttccatttagaattgtttaaagtgaatcctagttaattcaag |
38341973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 38446118 - 38446166
Alignment:
| Q |
1 |
tttaaatttccatctacaattgtttaaactgaatcctagttaattcaag |
49 |
Q |
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||||||||||||| || ||||||||||| |||||||||||||||||||| |
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| T |
38446118 |
tttaaatttccatttagaattgtttaaagtgaatcctagttaattcaag |
38446166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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