View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10479_low_13 (Length: 240)

Name: NF10479_low_13
Description: NF10479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10479_low_13
NF10479_low_13
[»] chr2 (23 HSPs)
chr2 (19-194)||(9329418-9329593)
chr2 (8-178)||(8572673-8572842)
chr2 (19-177)||(9060270-9060428)
chr2 (4-174)||(9316826-9316999)
chr2 (4-176)||(9321795-9321967)
chr2 (4-122)||(10372686-10372804)
chr2 (10-195)||(7114802-7114984)
chr2 (4-150)||(9292732-9292878)
chr2 (4-150)||(10353949-10354095)
chr2 (10-151)||(10336621-10336762)
chr2 (17-150)||(10348620-10348753)
chr2 (20-168)||(12018095-12018243)
chr2 (10-145)||(9275333-9275468)
chr2 (19-118)||(9357935-9358034)
chr2 (20-157)||(12011785-12011922)
chr2 (11-151)||(9283372-9283512)
chr2 (9-157)||(12005357-12005505)
chr2 (20-129)||(7612716-7612825)
chr2 (10-90)||(14551130-14551209)
chr2 (27-129)||(17565334-17565436)
chr2 (20-99)||(9365415-9365494)
chr2 (20-126)||(8578748-8578854)
chr2 (24-129)||(11986745-11986850)
[»] chr3 (2 HSPs)
chr3 (4-170)||(37463326-37463492)
chr3 (38-129)||(39428717-39428807)
[»] scaffold0667 (1 HSPs)
scaffold0667 (4-150)||(5263-5409)
[»] chr4 (2 HSPs)
chr4 (4-150)||(26575683-26575829)
chr4 (10-96)||(561980-562066)
[»] chr8 (1 HSPs)
chr8 (4-178)||(41965896-41966067)
[»] chr5 (1 HSPs)
chr5 (21-129)||(36225571-36225679)
[»] chr1 (4 HSPs)
chr1 (8-151)||(29452549-29452692)
chr1 (8-151)||(29442557-29442700)
chr1 (8-151)||(29467023-29467166)
chr1 (8-151)||(29424022-29424165)
[»] chr7 (1 HSPs)
chr7 (20-114)||(45238749-45238843)


Alignment Details
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 9329418 - 9329593
Alignment:
Q  19 atttttgaggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggagaagtgattttactggtaagcgg 118  Q
    |||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||    
T  9329418 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgg 9329517  T
Q  119 gagaggatttccgtaagtatttccggcggaagaacatcatccgtcattggaaggaaggaaagttcgttctacggtt 194  Q
    |||||||||||||| |  | ||||||| ||||||||||| ||| |||||||||||||||| |||||||||| ||||    
T  9329518 gagaggatttccgttaacaattccggcagaagaacatcacccgccattggaaggaaggaaggttcgttctagggtt 9329593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 8 - 178
Target Start/End: Complemental strand, 8572842 - 8572673
Alignment:
Q  8 cgattgagggaatttttgaggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggagaagtgatttta 107  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||| ||||||||||| ||||    
T  8572842 cgattgagggaatttttgaggtgaaggttggtgaagttgtgggaatcgattatagatttaagtgattttgaagttgatcggaatcggagaagtga-ttta 8572744  T
Q  108 ctggtaagcgggagaggatttccgtaagtatttccggcggaagaacatcatccgtcattggaaggaaggaa 178  Q
    |||||| |||||||| |||||| || | |||||||| ||||||||||||| ||| ||||||||||||||||    
T  8572743 ctggtatgcgggagaagatttcagtgactatttccgacggaagaacatcacccgccattggaaggaaggaa 8572673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 19 - 177
Target Start/End: Complemental strand, 9060428 - 9060270
Alignment:
Q  19 atttttgaggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggagaagtgattttactggtaagcgg 118  Q
    ||||||||||| |||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||  || |||||||||    
T  9060428 atttttgaggtaaaggttagtgaagttgtgagaatcgattaaggatttaagtgattttgaagttgatcggaatcggagaagtgattgaaccggtaagcgg 9060329  T
Q  119 gagaggatttccgtaagtatttccggcggaagaacatcatccgtcattggaaggaagga 177  Q
    |||| |||||| | ||||||||||||||||||||||||| ||| |||||||||||||||    
T  9060328 gagaagatttcggcaagtatttccggcggaagaacatcagccgccattggaaggaagga 9060270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 174
Target Start/End: Original strand, 9316826 - 9316999
Alignment:
Q  4 ggatcgattgagggaatt---tttgaggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggagaagt 100  Q
    ||||||||||||||||||   |||||||||||||||| |||||||||  ||||| ||||| ||||||||||||||||||||||||||||| |||||||||    
T  9316826 ggatcgattgagggaattatttttgaggtgaaggttgatgaagttgtgagaatctattaaagatttaagtgattttgaagttgatcggaatcggagaagt 9316925  T
Q  101 gattttactggtaagcgggagaggatttccgtaagtatttccggcggaagaacatcatccgtcattggaaggaa 174  Q
    ||||||||||||||| |||||| |||||| |  |||||||||||||||||| | ||| ||| ||||||||||||    
T  9316926 gattttactggtaagtgggagaagatttcggcgagtatttccggcggaagaccgtcagccgccattggaaggaa 9316999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 176
Target Start/End: Original strand, 9321795 - 9321967
Alignment:
Q  4 ggatcgattgagggaatttttgaggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggagaagtgat 103  Q
    ||||||| |||||||||||||||| ||||||||| |||||| ||  |||||||||| ||||||||||||||| ||||||||||||||  |||||||||||    
T  9321795 ggatcgactgagggaatttttgagatgaaggttgatgaagtggtgagaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgat 9321894  T
Q  104 tttactggtaagcgggagaggatttccgtaagtatttccggcggaagaacatcatccgtcattggaaggaagg 176  Q
    ||||| |||||||||||||||||||||   |  | |||||||||| ||||||||  || ||||||||||||||    
T  9321895 tttaccggtaagcgggagaggatttcctccaacaattccggcggaggaacatcactcgccattggaaggaagg 9321967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 10372686 - 10372804
Alignment:
Q  4 ggatcgattgagggaatttttgaggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggagaagtgat 103  Q
    |||||||||||||||||||| ||||||||||||| |||| |||| |||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||    
T  10372686 ggatcgattgagggaattttggaggtgaaggttgatgaatttgtgggaatcgattaatgatttaaatgattttgaagttgatcggaatcggagaagtgat 10372785  T
Q  104 tttactggtaagcgggaga 122  Q
    ||||| |||||||||||||    
T  10372786 tttaccggtaagcgggaga 10372804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 10 - 195
Target Start/End: Complemental strand, 7114984 - 7114802
Alignment:
Q  10 attgagggaatttttgaggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggagaagtgattttact 109  Q
    ||||| ||||||||| || ||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||  ||||    
T  7114984 attgaaggaatttttaagatgaaggttgatgaatttgtgggaatcgattaaggatttaagtgattttgaagttgatcggaatcgaagaagtgatcgtact 7114885  T
Q  110 ggtaagcgggagaggatttccgtaagtatttccggcggaagaacatcatccgtcattggaaggaaggaaagttcgttctacggttt 195  Q
    |||| ||| |||| |||||| |  |||||||||||||||||   |||| ||| ||||||||||| | || |||||||||| |||||    
T  7114884 ggtaggcgagagaagatttcggatagtatttccggcggaag---atcagccgccattggaaggaggcaaggttcgttctagggttt 7114802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 150
Target Start/End: Original strand, 9292732 - 9292878
Alignment:
Q  4 ggatcgattgagggaatttttgaggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggagaagtgat 103  Q
    |||||| |||||||||||||||||||||||||| |||||| |||  |||||||||| ||||||||||||||||||| |||||||||| | ||||||||||    
T  9292732 ggatcggttgagggaatttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatcggaatctgagaagtgat 9292831  T
Q  104 tttactggtaagcgggagaggatttccgtaagtatttccggcggaag 150  Q
    |||||||||| |||||||| |||||| |  | |||||| ||||||||    
T  9292832 tttactggtacgcgggagaagatttcggcgactatttctggcggaag 9292878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 150
Target Start/End: Original strand, 10353949 - 10354095
Alignment:
Q  4 ggatcgattgagggaatttttgaggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggagaagtgat 103  Q
    |||| ||||| |||||||| |||||||||||||| |||| |||||||||||||||| |||||||| ||||||||||||||||||||| | ||||||||||    
T  10353949 ggattgattgggggaatttctgaggtgaaggttgatgaatttgttggaatcgattagggatttaaatgattttgaagttgatcggaatctgagaagtgat 10354048  T
Q  104 tttactggtaagcgggagaggatttccgtaagtatttccggcggaag 150  Q
     |||| ||||||||||| |||||||| || || |||||||| |||||    
T  10354049 attaccggtaagcgggaaaggatttcggtgagaatttccggtggaag 10354095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 10 - 151
Target Start/End: Original strand, 10336621 - 10336762
Alignment:
Q  10 attgagggaatttttgaggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggagaagtgattttact 109  Q
    ||||||||||||||  |||||||||||| |||| ||||  ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||     
T  10336621 attgagggaattttgaaggtgaaggttgatgaatttgtgagaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttacc 10336720  T
Q  110 ggtaagcgggagaggatttccgtaagtatttccggcggaaga 151  Q
    ||||| ||||||| |||||| |  || |||||||||||||||    
T  10336721 ggtaaacgggagaagatttcggagagaatttccggcggaaga 10336762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 10348620 - 10348753
Alignment:
Q  17 gaatttttgaggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggagaagtgattttactggtaagc 116  Q
    |||||||| |||||||||||| |||| |||  |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||    
T  10348620 gaattttttaggtgaaggttgatgaatttgagggaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagc 10348719  T
Q  117 gggagaggatttccgtaagtatttccggcggaag 150  Q
    |||||| |||||| |  || || |||||||||||    
T  10348720 gggagaagatttcggcgagaatatccggcggaag 10348753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 20 - 168
Target Start/End: Complemental strand, 12018243 - 12018095
Alignment:
Q  20 tttttgaggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggagaagtgattttactggtaagcggg 119  Q
    |||||||| ||||| |||||||||||||  |||||||||| |||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||    
T  12018243 tttttgagttgaagattggtgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcgaagaagtgattttactggtaagcggg 12018144  T
Q  120 agaggatttccgtaagtatttccggcggaagaacatcatccgtcattgg 168  Q
    ||| |||||| |  ||||| || | |||||||| || ||||| ||||||    
T  12018143 agaagatttcggcgagtatgtctgacggaagaagataatccgacattgg 12018095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 9275333 - 9275468
Alignment:
Q  10 attgagggaatttttgaggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggagaagtgattttact 109  Q
    |||||||||||||||||| ||||||||| ||||||||| |||||| || || |||||||||||||||||  |||||||||| | ||||||||||| ||||    
T  9275333 attgagggaatttttgagatgaaggttgatgaagttgtgggaatcaatcaacgatttaagtgattttgagattgatcggaatcagagaagtgattgtact 9275432  T
Q  110 ggtaagcgggagaggatttccgtaagtatttccggc 145  Q
    ||||| ||||||| |||||| | | |||||||||||    
T  9275433 ggtaaccgggagaagatttcggcaggtatttccggc 9275468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 9357935 - 9358034
Alignment:
Q  19 atttttgaggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggagaagtgattttactggtaagcgg 118  Q
    ||||||||||||||||||  |||||||||  |||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||    
T  9357935 atttttgaggtgaaggtttatgaagttgtgagaatcgattaaggatttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcgg 9358034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 12011922 - 12011785
Alignment:
Q  20 tttttgaggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggagaagtgattttactggtaagcggg 119  Q
    |||||||||||||| |||||||||||||  |||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| |    |||||||||    
T  12011922 tttttgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcggagaagtgattgtggatgtaagcggg 12011823  T
Q  120 agaggatttccgtaagtatttccggcggaagaacatca 157  Q
    ||| |||||| || |||||||| |  ||||||||||||    
T  12011822 agaagatttcggtgagtatttctgaaggaagaacatca 12011785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 11 - 151
Target Start/End: Complemental strand, 9283512 - 9283372
Alignment:
Q  11 ttgagggaatttttgaggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggagaagtgattttactg 110  Q
    ||||||||| ||||||||||||||||| |||| ||||  ||||| |||| ||||  ||||||||| |||||||||||||| ||||| |||||||| ||||    
T  9283512 ttgagggaacttttgaggtgaaggttgatgaatttgtgagaatctattagggatcgaagtgatttagaagttgatcggaatcggagtagtgatttaactg 9283413  T
Q  111 gtaagcgggagaggatttccgtaagtatttccggcggaaga 151  Q
    |||||| ||||| |||||| | |||||| ||||||||||||    
T  9283412 gtaagcaggagaagatttcggcaagtatgtccggcggaaga 9283372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 9 - 157
Target Start/End: Complemental strand, 12005505 - 12005357
Alignment:
Q  9 gattgagggaatttttgaggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggagaagtgattttac 108  Q
    ||||||| |||||||| || |||||||||||||||||||  |||||||||| ||||||||| |||| ||||||||| ||||| ||||||||||||| |      
T  12005505 gattgagagaattttttagatgaaggttggtgaagttgtgagaatcgattatggatttaagcgattctgaagttgagcggaatcggagaagtgattgtgg 12005406  T
Q  109 tggtaagcgggagaggatttccgtaagtatttccggcggaagaacatca 157  Q
     ||||||||||||| |||||| || |||||||| |  ||||||||||||    
T  12005405 aggtaagcgggagaagatttcggtgagtatttctgaaggaagaacatca 12005357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 7612716 - 7612825
Alignment:
Q  20 tttttgaggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggagaagtgattttactggtaagcggg 119  Q
    ||||||||||||||||| |||||||||| |||||| |||||||||||||| ||||| ||| |||||||||| ||||| || | || ||| |||||||| |    
T  7612716 tttttgaggtgaaggtttgtgaagttgtgggaatcaattaaggatttaagcgatttagaaattgatcggaatcggaggagggtttgtaccggtaagcgag 7612815  T
Q  120 agaggatttc 129  Q
    ||||||||||    
T  7612816 agaggatttc 7612825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 14551130 - 14551209
Alignment:
Q  10 attgagggaatttttgaggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaa 90  Q
    ||||||||||||||| |||||||| ||| ||||||||| ||||||||||| ||||| ||||||||||||||||||||||||    
T  14551130 attgagggaattttt-aggtgaagtttgatgaagttgtgggaatcgattagggattgaagtgattttgaagttgatcggaa 14551209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 17565436 - 17565334
Alignment:
Q  27 ggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggagaagtgattttactggtaagcgggagaggat 126  Q
    ||||||||||||||||||| | |||||| |||||  ||||||||||||| || ||||||||||  ||||| || |||| |||||||||||| ||||||||    
T  17565436 ggtgaaggttggtgaagttatgggaatcaattaaaaatttaagtgatttcgacgttgatcggagtcggaggagggattgtactggtaagcgagagaggat 17565337  T
Q  127 ttc 129  Q
    |||    
T  17565336 ttc 17565334  T

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Target: chr2; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 9365415 - 9365494
Alignment:
Q  20 tttttgaggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggagaag 99  Q
    |||||||| || |||||||||||| |||  |||||||||| |||||||||||||||||| ||||||||||| ||||||||    
T  9365415 tttttgagatggaggttggtgaaggtgtgagaatcgattatggatttaagtgattttgaggttgatcggaatcggagaag 9365494  T

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Target: chr2; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 8578854 - 8578748
Alignment:
Q  20 tttttgaggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggagaagtgattttactggtaagcggg 119  Q
    |||||||||| | | ||||||||| ||| |||||| || ||||||  ||||||||| ||| |||||||||| |||||||| |||| ||| ||||||||||    
T  8578854 tttttgaggtaatgtttggtgaaggtgtgggaatctatgaaggatcgaagtgatttagaaattgatcggaatcggagaagggattgtaccggtaagcggg 8578755  T
Q  120 agaggat 126  Q
    |||||||    
T  8578754 agaggat 8578748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 11986850 - 11986745
Alignment:
Q  24 tgaggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggagaagtgattttactggtaagcgggagag 123  Q
    |||||||||| |||||||||||||  ||||| |||| ||||||||| |||| ||||||||| ||||| ||||||||||||| |    ||||||||||||     
T  11986850 tgaggtgaagattggtgaagttgtgagaatcaattatggatttaagcgattctgaagttgagcggaatcggagaagtgattgtggatgtaagcgggagaa 11986751  T
Q  124 gatttc 129  Q
    ||||||    
T  11986750 gatttc 11986745  T

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Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 37463326 - 37463492
Alignment:
Q  4 ggatcgattgagggaatttttgaggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggagaagtgat 103  Q
    |||| ||||||||| ||||||||| ||||||||| |||||||||  ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  37463326 ggattgattgaggggatttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcggagaagtgat 37463425  T
Q  104 tttactggtaagcgggagaggatttccgtaagtatttccggcggaagaacatcatccgtcattggaa 170  Q
    | ||||||||| |||||||||||||| |  |||||||||||||||||| | ||||||| ||||||||    
T  37463426 tctactggtaaacgggagaggatttcggcgagtatttccggcggaagaccgtcatccgccattggaa 37463492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 129
Target Start/End: Original strand, 39428717 - 39428807
Alignment:
Q  38 gtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggagaagtgattttactggtaagcgggagaggatttc 129  Q
    |||||||||| ||||| |||||||||||||| | |||||||||||||||||||  |||| || ||||  || ||||||||||||||||||||    
T  39428717 gtgaagttgtgggaat-gattaaggatttaactcattttgaagttgatcggaattggaggagggattgcaccggtaagcgggagaggatttc 39428807  T

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Target: scaffold0667 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 4 - 150
Target Start/End: Original strand, 5263 - 5409
Alignment:
Q  4 ggatcgattgagggaatttttgaggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggagaagtgat 103  Q
    ||||| |||||||||||||||| ||||||||||| |||||||||  |||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  5263 ggatctattgagggaatttttgcggtgaaggttgatgaagttgtgagaatcgattatggatttaagtgattttgaagttgatcggaatcggagaagtgat 5362  T
Q  104 tttactggtaagcgggagaggatttccgtaagtatttccggcggaag 150  Q
    ||||| ||||||||||||| |||||| |  ||| | |||||||||||    
T  5363 tttaccggtaagcgggagaagatttctgcgagtgtgtccggcggaag 5409  T

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Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 4 - 150
Target Start/End: Original strand, 26575683 - 26575829
Alignment:
Q  4 ggatcgattgagggaatttttgaggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggagaagtgat 103  Q
    |||||||||| |||||||| |||||||||||||| |||| |||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  26575683 ggatcgattgggggaatttctgaggtgaaggttgatgaatttgtaggaatcgattaagaatttaagtgattttgaagttgatcggaatcggagaagtgat 26575782  T
Q  104 tttactggtaagcgggagaggatttccgtaagtatttccggcggaag 150  Q
     |||| ||||| ||||||| |||||| || || |||||||| |||||    
T  26575783 attaccggtaaacgggagaagatttcggtgagaatttccggtggaag 26575829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 561980 - 562066
Alignment:
Q  10 attgagggaatttttgaggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggag 96  Q
    ||||||||| ||||||||||||||||| |||||||||| ||||||||||| |||||||||  |||||||| || ||||||| |||||    
T  561980 attgagggagtttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagccattttgaacttaatcggaatcggag 562066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 178
Target Start/End: Complemental strand, 41966067 - 41965896
Alignment:
Q  4 ggatcgattgagggaatttttgaggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggagaagtgat 103  Q
    ||||||||||||||| ||| |||||||||||||| ||||||||| ||||||||||||||||  ||||||||| || ||||||||||| ||||||| ||||    
T  41966067 ggatcgattgagggattttctgaggtgaaggttgatgaagttgtgggaatcgattaaggatcgaagtgatttcgaggttgatcggaatcggagaactgat 41965968  T
Q  104 tttactggtaagcgggagaggatttccgtaagtatttccggcggaagaacatcatccgtcattggaaggaaggaa 178  Q
    ||||| |||||  |||||| |||||| |  |||||||| ||||| ||   |||| |||||||||  |||||||||    
T  41965967 tttaccggtaatagggagaagatttcagcgagtatttctggcggtag---atcaaccgtcattgtgaggaaggaa 41965896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 36225571 - 36225679
Alignment:
Q  21 ttttgaggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggagaagtgattttactggtaagcggga 120  Q
    ||||||||||||| || ||||||||||  ||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||  ||| ||||||||||    
T  36225571 ttttgaggtgaagattagtgaagttgtgcgaatcgattaacgatttaagtgattttgaagttgatcggaatcggaggagggattgcactagtaagcggga 36225670  T
Q  121 gaggatttc 129  Q
    |||||||||    
T  36225671 gaggatttc 36225679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 29452692 - 29452549
Alignment:
Q  8 cgattgagggaatttttgaggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggagaagtgatttta 107  Q
    |||||||||||||||| ||||||||| ||| |||||||||  |||||||||| ||||| |||||||||||| ||||| ||||| ||||| || |||| ||    
T  29452692 cgattgagggaattttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaatcggaggagggattgta 29452593  T
Q  108 ctggtaagcgggagaggatttccgtaagtatttccggcggaaga 151  Q
    | |||||  | ||||||||  | |||||||| ||||||||||||    
T  29452592 ccggtaacagagagaggataccggtaagtatctccggcggaaga 29452549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 29442700 - 29442557
Alignment:
Q  8 cgattgagggaatttttgaggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggagaagtgatttta 107  Q
    ||||||||| |||||| ||||||||| ||| ||||||| | ||||||||||| ||||| ||||||||| || ||||| ||||| ||||| || |||| |     
T  29442700 cgattgaggaaattttggaggtgaagtttgatgaagttatgggaatcgattagggattgaagtgatttcgacgttgaacggaatcggaggagggattgtg 29442601  T
Q  108 ctggtaagcgggagaggatttccgtaagtatttccggcggaaga 151  Q
    | |||||  | ||||||||| | |||||||| ||||||||||||    
T  29442600 ccggtaacagagagaggattccggtaagtatctccggcggaaga 29442557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 29467166 - 29467023
Alignment:
Q  8 cgattgagggaatttttgaggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggagaagtgatttta 107  Q
    |||||||||||||||  ||||||||| ||| ||||||||| ||||||||||| ||||| |||||||||||| ||||| ||||| ||||| || |||| ||    
T  29467166 cgattgagggaatttcggaggtgaagtttgatgaagttgtgggaatcgattagggattgaagtgattttgaggttgaacggaatcggaggagggattgta 29467067  T
Q  108 ctggtaagcgggagaggatttccgtaagtatttccggcggaaga 151  Q
    | |||||  | |||| |||| | || | ||||||||| ||||||    
T  29467066 ccggtaacagagagatgattccggtgattatttccggaggaaga 29467023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 29424022 - 29424165
Alignment:
Q  8 cgattgagggaatttttgaggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggagaagtgatttta 107  Q
    ||||||| |||||| | ||||||||| ||| ||||| ||| |||||||||||  |||| |||||||||||| ||||| ||||| ||||| || |||| ||    
T  29424022 cgattgaaggaattatggaggtgaagcttgatgaagctgtgggaatcgattagagattgaagtgattttgaggttgaacggaatcggaggagggattgta 29424121  T
Q  108 ctggtaagcgggagaggatttccgtaagtatttccggcggaaga 151  Q
    | |||||  | ||||||||| | || ||||| ||||||||||||    
T  29424122 ccggtaacagagagaggattccggtgagtatctccggcggaaga 29424165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 45238749 - 45238843
Alignment:
Q  20 tttttgaggtgaaggttggtgaagttgttggaatcgattaaggatttaagtgattttgaagttgatcggaaacggagaagtgattttactggtaa 114  Q
    |||||||| |||||| ||||||||||||    ||||||||| ||   |||||| ||||||||||||||||| ||||| || |||| ||| |||||    
T  45238749 tttttgagatgaagggtggtgaagttgtaactatcgattaaagaaagaagtgagtttgaagttgatcggaatcggagtagggattctaccggtaa 45238843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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