View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10479_low_2 (Length: 462)
Name: NF10479_low_2
Description: NF10479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10479_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 12 - 460
Target Start/End: Original strand, 34092615 - 34093063
Alignment:
| Q |
12 |
actgattcataaagtgagatattttatagttcatcctaattcaaatttcaataataatattgataggttaatcatctttattcatgggttcgaacatgaa |
111 |
Q |
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||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
34092615 |
actgatttataaagtgagatattttatagttcgtcctaattcaaatttcaataataatattgataggttaatcacctttattcataggttcgaacatgaa |
34092714 |
T |
|
| Q |
112 |
acttcaacgtttcgtattatttggatcaccattatcattttgtctgcaaacaaaaataaaaagaaagagatataactcttcataaacnnnnnnnnnnnnn |
211 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34092715 |
acttcaacgtttcgtattatttggatcaccataatcatttcgtctgcaaacaaaaataaaaagaaagagatataactcttcataaacttttttattttta |
34092814 |
T |
|
| Q |
212 |
nnnnnnaaatacatgattaggacttttctcaatgagaaactttgccaaagtcagattgatattgaataattggctaaacaaatctcacattatatataca |
311 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34092815 |
gtttttaaatacatgattaggacttttctcaataagaaactttgccaaagtcagattgatattgaataattggcaaaacaaatctcacattatatataca |
34092914 |
T |
|
| Q |
312 |
caaccacttgaaataaaagaaacaattacattgtatgcaaatcattatcgttggctattagagcatatattaattcaaagatgaaaaagacattggtagc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34092915 |
caaccacttgaaataaaagaaacaattacattgtatgcaaatcattatcgttggctattagagcatatattaattcaaagatgaaaaagacattggtagc |
34093014 |
T |
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| Q |
412 |
tagaaaaatgaagaagaggcattaggttaggtatatgtgatgatgtcca |
460 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34093015 |
tagaaaaatgaagaagaggcattaggttaggtaaatgtgatgatgtcca |
34093063 |
T |
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