View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10479_low_4 (Length: 342)

Name: NF10479_low_4
Description: NF10479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10479_low_4
NF10479_low_4
[»] chr3 (34 HSPs)
chr3 (8-342)||(9343694-9344028)
chr3 (11-342)||(9448163-9448494)
chr3 (75-213)||(41985606-41985744)
chr3 (73-213)||(9494806-9494946)
chr3 (75-196)||(41980849-41980970)
chr3 (83-213)||(9352879-9353009)
chr3 (127-213)||(9407344-9407430)
chr3 (75-193)||(9485969-9486087)
chr3 (75-196)||(9695616-9695737)
chr3 (75-183)||(9336548-9336656)
chr3 (101-213)||(9617489-9617601)
chr3 (110-221)||(9416543-9416654)
chr3 (75-183)||(9329844-9329952)
chr3 (89-196)||(9432891-9432998)
chr3 (93-196)||(9655375-9655478)
chr3 (127-221)||(9397755-9397849)
chr3 (135-213)||(9425551-9425629)
chr3 (131-221)||(9614009-9614099)
chr3 (128-213)||(9377064-9377149)
chr3 (270-342)||(9329685-9329757)
chr3 (270-314)||(16011844-16011888)
chr3 (90-221)||(9347957-9348088)
chr3 (90-221)||(9369611-9369742)
chr3 (93-196)||(9646382-9646485)
chr3 (90-212)||(9340650-9340772)
chr3 (127-196)||(9441833-9441902)
chr3 (273-342)||(9495009-9495078)
chr3 (270-342)||(9336389-9336461)
chr3 (273-321)||(9695838-9695886)
chr3 (270-321)||(9395147-9395198)
chr3 (260-342)||(9617647-9617729)
chr3 (161-195)||(16011768-16011802)
chr3 (260-321)||(41985501-41985562)
chr3 (260-324)||(41980724-41980788)
[»] chr1 (7 HSPs)
chr1 (134-342)||(4439706-4439917)
chr1 (80-198)||(235206-235324)
chr1 (131-342)||(4428477-4428691)
chr1 (128-189)||(18991206-18991267)
chr1 (99-213)||(8814386-8814500)
chr1 (99-183)||(231589-231673)
chr1 (129-197)||(251448-251516)
[»] chr2 (2 HSPs)
chr2 (78-213)||(20694304-20694439)
chr2 (261-342)||(20694463-20694544)
[»] chr6 (9 HSPs)
chr6 (74-213)||(7046817-7046956)
chr6 (75-226)||(7041461-7041612)
chr6 (75-154)||(9170854-9170933)
chr6 (75-196)||(7012809-7012936)
chr6 (75-196)||(7025745-7025872)
chr6 (75-154)||(7029850-7029929)
chr6 (279-342)||(7041357-7041420)
chr6 (75-154)||(9159495-9159574)
chr6 (270-342)||(213255-213327)
[»] chr5 (2 HSPs)
chr5 (81-191)||(33541652-33541762)
chr5 (83-213)||(18571086-18571219)
[»] chr8 (2 HSPs)
chr8 (110-191)||(44688820-44688901)
chr8 (260-318)||(13170820-13170878)
[»] chr7 (1 HSPs)
chr7 (270-342)||(450315-450387)


Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 342
Target Start/End: Complemental strand, 9344028 - 9343694
Alignment:
Q  8 gagttgttgctagtggacatttatgagtgtttttggttcgatttcctgtggcctgatgctctgagggttgatgtgtttatgcttgatgagtaggagatga 107  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||| | | ||||||||| | |||||||||||||||| ||||||||||  ||||| ||    
T  9344028 gagttgttgctagtggacatttatgagtgtttttgtttcgagttcccgggtcctgatgctataagggttgatgtgtttaagcttgatgagatggagaaga 9343929  T
Q  108 agtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgcttctgcttcggatttgtgtgttcctagaggaaa 207  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9343928 agtgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgcttctgcttcggatttgtgtgttcctagaggaaa 9343829  T
Q  208 ttgtgttgtctttacttatggtggcgacttcctgtattttagaaagatgtggtgtgggaactgtgtttttcacttggatcaaggtcggctttcacctctg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  9343828 ttgtgttgtctttacttatggtggcgacttcctgtattttagaaagatgtggtgtggaaactgtgtttttcacatggatcaaggtcggctttcacctctg 9343729  T
Q  308 tctgattgtcctgaatattttaccttgttctggcc 342  Q
    |||||||||||||||||||||||||||||||||||    
T  9343728 tctgattgtcctgaatattttaccttgttctggcc 9343694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 342
Target Start/End: Complemental strand, 9448494 - 9448163
Alignment:
Q  11 ttgttgctagtggacatttatgagtgtttttggttcgatttcctgtggcctgatgctctgagggttgatgtgtttatgcttgatgagtaggagatgaagt 110  Q
    |||||||||||||||||||||||||||||||| ||||| |||| | | ||||||||| | |||||||||||||||| |||| ||||| |||||| ||| |    
T  9448494 ttgttgctagtggacatttatgagtgtttttgtttcgagttcccgggtcctgatgctataagggttgatgtgtttaagctttatgagaaggagaagaaat 9448395  T
Q  111 gggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgcttctgcttcggatttgtgtgttcctagaggaaattg 210  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9448394 gggtgaagttaacaactttaggggatagtgttttgttcttggggaatgactgttcgttttctgcttctgcttcggatttgtgtcttcctagaggaaattg 9448295  T
Q  211 tgttgtctttacttatggtggcgacttcctgtattttagaaagatgtggtgtgggaactgtgtttttcacttggatcaaggtcggctttcacctctgtct 310  Q
     |||||||||||| ||||| ||||||||| |||||||| ||| |||||||||||||| ||||||||| ||||||||||||| | |||||||||| |||||    
T  9448294 cgttgtctttactgatggtagcgacttccagtattttaaaaacatgtggtgtgggaattgtgttttttacttggatcaaggcctgctttcacctttgtct 9448195  T
Q  311 gattgtcctgaatattttaccttgttctggcc 342  Q
    ||||| ||||||  ||| | ||||||||||||    
T  9448194 gattgccctgaaattttgaacttgttctggcc 9448163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 213
Target Start/End: Complemental strand, 41985744 - 41985606
Alignment:
Q  75 ttgatgtgtttatgcttgatgagtaggagatgaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgc 174  Q
    |||||||||| |  ||||||||| |||||| ||| ||||| ||||   | | |||||||||||| ||||||||||||||||||| |||||||||||||||    
T  41985744 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 41985645  T
Q  175 ttctgcttcggatttgtgtgttcctagaggaaattgtgt 213  Q
    ||||||||||||||||| ||||   | ||||||||||||    
T  41985644 ttctgcttcggatttgtctgttgtcaaaggaaattgtgt 41985606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 73 - 213
Target Start/End: Original strand, 9494806 - 9494946
Alignment:
Q  73 ggttgatgtgtttatgcttgatgagtaggagatgaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttct 172  Q
    |||| ||||| ||| |||||||||| |||||||||  |||||||| |  |  | |||||||||||| ||||||||||||||||||| |||||||||||||    
T  9494806 ggttaatgtgcttaggcttgatgagaaggagatgagatgggtgaatttgatgagtttaggggatagggttttgttcttggggaatggatgttcgttttct 9494905  T
Q  173 gcttctgcttcggatttgtgtgttcctagaggaaattgtgt 213  Q
    ||||||||||| |||||||| ||| | | ||| ||||||||    
T  9494906 gcttctgcttctgatttgtgcgtttccaaagggaattgtgt 9494946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 196
Target Start/End: Complemental strand, 41980970 - 41980849
Alignment:
Q  75 ttgatgtgtttatgcttgatgagtaggagatgaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgc 174  Q
    |||||||||||| ||||| | || | |||| ||| ||||| ||||  || | |||||||||||| ||||||||||||||||||| ||||||||||| |||    
T  41980970 ttgatgtgtttaggcttgctaagaaagagaagaaatgggtcaagttgacgagtttaggggatagagttttgttcttggggaatggatgttcgttttttgc 41980871  T
Q  175 ttctgcttcggatttgtgtgtt 196  Q
    |||||||||  |||||| ||||    
T  41980870 ttctgcttcaaatttgtctgtt 41980849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 83 - 213
Target Start/End: Complemental strand, 9353009 - 9352879
Alignment:
Q  83 tttatgcttgatgagtaggagatgaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgcttctgctt 182  Q
    |||| ||||||||||  ||||| ||||||||||||||  | ||  ||||||| ||| ||||||||  |||||| || |||||||||||||||||||| ||    
T  9353009 tttaagcttgatgagatggagaagaagtgggtgaagttgaaaaaattagggggtagggttttgtttgtggggagtggatgttcgttttctgcttctggtt 9352910  T
Q  183 cggatttgtgtgttcctagaggaaattgtgt 213  Q
     |||| ||||| |||| | ||||||||||||    
T  9352909 gggatctgtgtcttcccaaaggaaattgtgt 9352879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 127 - 213
Target Start/End: Complemental strand, 9407430 - 9407344
Alignment:
Q  127 tttaggggatagtgttttgttcttggggaatgaatgttcgttttctgcttctgcttcggatttgtgtgttcctagaggaaattgtgt 213  Q
    |||||||||||| ||||||||||| | ||||| |||||| ||||||||||| |||||||||||||||||| | | ||| ||||||||    
T  9407430 tttaggggatagggttttgttctttgtgaatggatgttcattttctgcttcagcttcggatttgtgtgttgccaaagggaattgtgt 9407344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 75 - 193
Target Start/End: Original strand, 9485969 - 9486087
Alignment:
Q  75 ttgatgtgtttatgcttgatgagtaggagatgaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgc 174  Q
    |||||||||||| |||||||||| |||||| |||||||||| ||   | || ||| |||||||  |||||||| |||||| | |||||| | ||||||||    
T  9485969 ttgatgtgtttaggcttgatgagaaggagaagaagtgggtggaggtgagaaatttgggggatatggttttgtttttgggggaagaatgtgctttttctgc 9486068  T
Q  175 ttctgcttcggatttgtgt 193  Q
    ||| |||||||||||||||    
T  9486069 ttcggcttcggatttgtgt 9486087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 75 - 196
Target Start/End: Original strand, 9695616 - 9695737
Alignment:
Q  75 ttgatgtgtttatgcttgatgagtaggagatgaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgc 174  Q
    ||||||| || | |||||||||| |||||| ||||||||| ||||  || | |||||||||||| |||||||| |||||| | || |||||||| |||||    
T  9695616 ttgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagggttttgtttttgggggaagactgttcgttctctgc 9695715  T
Q  175 ttctgcttcggatttgtgtgtt 196  Q
     |||||||| || |||||||||    
T  9695716 atctgcttcagagttgtgtgtt 9695737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 183
Target Start/End: Complemental strand, 9336656 - 9336548
Alignment:
Q  75 ttgatgtgtttatgcttgatgagtaggagatgaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgc 174  Q
    |||||||||||| |||||||||| | ||||  | |||||| |||   || | |||||| ||||  ||||||||||||||||||| |||||||||||||||    
T  9336656 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttttctgc 9336557  T
Q  175 ttctgcttc 183  Q
    |||||||||    
T  9336556 ttctgcttc 9336548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 213
Target Start/End: Original strand, 9617489 - 9617601
Alignment:
Q  101 gagatgaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgcttctgcttcggatttgtgtgttccta 200  Q
    |||| ||| ||||||||||  | || |||||||||||| ||||||||| | | ||||| |||||| ||||||||||||||||| |||||||||||| | |    
T  9617489 gagaagaaatgggtgaagttgaaaaatttaggggatagggttttgttccttgtgaatggatgttcattttctgcttctgcttcagatttgtgtgtttcca 9617588  T
Q  201 gaggaaattgtgt 213  Q
     ||| ||||||||    
T  9617589 aagggaattgtgt 9617601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 110 - 221
Target Start/End: Complemental strand, 9416654 - 9416543
Alignment:
Q  110 tgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgcttctgcttcggatttgtgtgttcctagaggaaatt 209  Q
    ||||||||||  || | |||||||||||| || |||||||| | |||| ||||||| ||||||||||| || | |||| |||||||| ||| ||| ||||    
T  9416654 tgggtgaagttgacgagtttaggggatagggtgttgttcttcgtgaataaatgttcattttctgcttcagccttggatatgtgtgttactaaagggaatt 9416555  T
Q  210 gtgttgtcttta 221  Q
    ||||||||||||    
T  9416554 gtgttgtcttta 9416543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 183
Target Start/End: Complemental strand, 9329952 - 9329844
Alignment:
Q  75 ttgatgtgtttatgcttgatgagtaggagatgaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgc 174  Q
    |||||||||||| |||||||||| | ||||  | |||||| ||||   | | |||||| ||||  ||||||||||||||||||| || ||||||||||||    
T  9329952 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagttggcgaatttaggagataaggttttgttcttggggaatggatattcgttttctgc 9329853  T
Q  175 ttctgcttc 183  Q
    |||||||||    
T  9329852 ttctgcttc 9329844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 196
Target Start/End: Complemental strand, 9432998 - 9432891
Alignment:
Q  89 cttgatgagtaggagatgaagtgggtgaag-tcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgcttctgcttcggat 187  Q
    ||||||||| |||||| ||||||||||||| |||| || |||||| ||||| ||||||||| | |||  ||||| ||| ||||||||||| || ||||||    
T  9432998 cttgatgagaaggagaggaagtgggtgaagatcaagaa-tttaggagatagggttttgttcatagggcttgaatattccttttctgcttcagcctcggat 9432900  T
Q  188 ttgtgtgtt 196  Q
    |||||||||    
T  9432899 ttgtgtgtt 9432891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 9655375 - 9655478
Alignment:
Q  93 atgagtaggagatgaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgcttctgcttcggatttgtg 192  Q
    ||||| |||||| ||| ||||||||||  |  | |||||||||||| |||||||| |||||  | | ||||||||||||||| || ||||||||||||||    
T  9655375 atgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgtttttgggcgaaggatgttcgttttctgcatcagcttcggatttgtg 9655474  T
Q  193 tgtt 196  Q
    ||||    
T  9655475 tgtt 9655478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 127 - 221
Target Start/End: Complemental strand, 9397849 - 9397755
Alignment:
Q  127 tttaggggatagtgttttgttcttggggaatgaatgttcgttttctgcttctgcttcggatttgtgtgttcctagaggaaattgtgttgtcttta 221  Q
    |||||||||||| || |||||||| | ||||| |||||| ||||| ||||| |||| ||||||||||||| | | ||| |||||||| |||||||    
T  9397849 tttaggggatagggtcttgttctttgtgaatggatgttcattttccgcttcagctttggatttgtgtgttgccaaagggaattgtgtcgtcttta 9397755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 135 - 213
Target Start/End: Complemental strand, 9425629 - 9425551
Alignment:
Q  135 atagtgttttgttcttggggaatgaatgttcgttttctgcttctgcttcggatttgtgtgttcctagaggaaattgtgt 213  Q
    |||| ||||||||||| | ||||| |||||| ||||||||||| |||||||||||||||||| | | ||| ||||||||    
T  9425629 atagggttttgttctttgtgaatggatgttcattttctgcttcagcttcggatttgtgtgttgccaaagggaattgtgt 9425551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 9614009 - 9614099
Alignment:
Q  131 ggggatagtgttttgttcttggggaatgaatgttcgttttctgcttctgcttcggatttgtgtgttcctagaggaaattgtgttgtcttta 221  Q
    |||||||  ||||| |||||||||| || |||||| ||||||||||||||||| ||| ||||| || | | ||||||||||||| ||||||    
T  9614009 ggggatatggtttttttcttggggagtggatgttcattttctgcttctgcttcagatctgtgtcttaccaaaggaaattgtgttatcttta 9614099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 213
Target Start/End: Complemental strand, 9377149 - 9377064
Alignment:
Q  128 ttaggggatagtgttttgttcttggggaatgaatgttcgttttctgcttctgcttcggatttgtgtgttcctagaggaaattgtgt 213  Q
    |||||||||||  |||||||  |||||| || |||||||||| |||||||||||| |||| ||||| |||| | ||||||||||||    
T  9377149 ttaggggataggattttgtttgtggggagtggatgttcgtttcctgcttctgcttgggatctgtgtcttcccaaaggaaattgtgt 9377064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 9329757 - 9329685
Alignment:
Q  270 gtgtttttcacttggatcaaggtcggctttcacctctgtctgattgtcctgaatattttaccttgttctggcc 342  Q
    |||||||||||||||||||||||| |  ||||||| |||| |||| |||||||||||| |  |||||||||||    
T  9329757 gtgtttttcacttggatcaaggtcaggcttcacctttgtcggattatcctgaatatttcaagttgttctggcc 9329685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 16011844 - 16011888
Alignment:
Q  270 gtgtttttcacttggatcaaggtcggctttcacctctgtctgatt 314  Q
    |||||||||||||||||||||||||| |||||||| |||||||||    
T  16011844 gtgtttttcacttggatcaaggtcggatttcacctttgtctgatt 16011888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 221
Target Start/End: Complemental strand, 9348088 - 9347957
Alignment:
Q  90 ttgatgagtaggagatgaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgcttctgcttcggattt 189  Q
    |||||||| |||||| ||||||||||||||  |    ||| ||||||||  |||| ||| | |||  || |||||||||||||||||||||||| ||| |    
T  9348088 ttgatgagaaggagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcgtggatgttcgttttctgcttctgcttcagatct 9347989  T
Q  190 gtgtgttcctagaggaaattgtgttgtcttta 221  Q
     ||| |||| | |||||||||||| |||||||    
T  9347988 atgtattccgaaaggaaattgtgtcgtcttta 9347957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 221
Target Start/End: Complemental strand, 9369742 - 9369611
Alignment:
Q  90 ttgatgagtaggagatgaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgcttctgcttcggattt 189  Q
    |||||||| |||||| ||||||||||||||  |    ||| ||||||||  |||| ||| | |||  || |||||||||||||||||||||||| ||| |    
T  9369742 ttgatgagaaggagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcgtggatgttcgttttctgcttctgcttcagatct 9369643  T
Q  190 gtgtgttcctagaggaaattgtgttgtcttta 221  Q
     ||| |||| | |||||||||||| |||||||    
T  9369642 atgtattccgaaaggaaattgtgtcgtcttta 9369611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 9646382 - 9646485
Alignment:
Q  93 atgagtaggagatgaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgcttctgcttcggatttgtg 192  Q
    ||||| |||||| ||| ||||||||||  |  | |||||||||||| |||||||| || ||  | | ||||||||||||||| || ||||||||||||||    
T  9646382 atgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgttttttggcgaaggatgttcgttttctgcatcagcttcggatttgtg 9646481  T
Q  193 tgtt 196  Q
    ||||    
T  9646482 tgtt 9646485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 212
Target Start/End: Complemental strand, 9340772 - 9340650
Alignment:
Q  90 ttgatgagtaggagatgaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgcttctgcttcggattt 189  Q
    |||||||| |||||| ||||||||||||||  |  | ||| |||||||| ||||| ||| | |||  || |||||||||||||||||||||||| ||| |    
T  9340772 ttgatgagaaggagaagaagtgggtgaagttgaggaatttcggggatagggtttttttcattgggcgtggatgttcgttttctgcttctgcttcagatct 9340673  T
Q  190 gtgtgttcctagaggaaattgtg 212  Q
     ||| |||  | |||||||||||    
T  9340672 atgtattcaaaaaggaaattgtg 9340650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 9441833 - 9441902
Alignment:
Q  127 tttaggggatagtgttttgttcttggggaatgaatgttcgttttctgcttctgcttcggatttgtgtgtt 196  Q
    |||||||||||| ||||||||||| | |||| ||||||| ||||||||||| || | |||| ||||||||    
T  9441833 tttaggggatagggttttgttctttgtgaataaatgttcattttctgcttcagccttggatatgtgtgtt 9441902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 342
Target Start/End: Original strand, 9495009 - 9495078
Alignment:
Q  273 tttttcacttggatcaaggtcggctttcacctctgtctgattgtcctgaatattttaccttgttctggcc 342  Q
    ||||| |||||| | |||||||| |||| ||| ||| ||| |||||||||||||||| ||||||||||||    
T  9495009 tttttgacttggttgaaggtcgggtttcgcctttgtgtgactgtcctgaatattttaacttgttctggcc 9495078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 9336461 - 9336389
Alignment:
Q  270 gtgtttttcacttggatcaaggtcggctttcacctctgtctgattgtcctgaatattttaccttgttctggcc 342  Q
    |||||||||||||||||||||||| |  ||||||| |||| |||| ||| |||||||| |  |||||||||||    
T  9336461 gtgtttttcacttggatcaaggtcaggcttcacctttgtcggattatcccgaatatttcaagttgttctggcc 9336389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 321
Target Start/End: Original strand, 9695838 - 9695886
Alignment:
Q  273 tttttcacttggatcaaggtcggctttcacctctgtctgattgtcctga 321  Q
    ||||||||||||||||||||||| |||||||| |||||| || ||||||    
T  9695838 tttttcacttggatcaaggtcgggtttcacctttgtctggttatcctga 9695886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 321
Target Start/End: Complemental strand, 9395198 - 9395147
Alignment:
Q  270 gtgtttttcacttggatcaaggtcggctttcacctctgtctgattgtcctga 321  Q
    ||||||||||||||||||| |||||| |||| ||||||||||| | ||||||    
T  9395198 gtgtttttcacttggatcagggtcggatttcccctctgtctgactatcctga 9395147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 342
Target Start/End: Original strand, 9617647 - 9617729
Alignment:
Q  260 tgtgggaactgtgtttttcacttggatcaaggtcggctttcacctctgtctgattgtcctgaatattttaccttgttctggcc 342  Q
    ||||||||  |||| ||||| ||||||||||||||||||||  || |||||  || ||||||||| || | ||||||||||||    
T  9617647 tgtgggaatcgtgtctttcatttggatcaaggtcggctttcgtctatgtctcgttatcctgaatacttcaacttgttctggcc 9617729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 16011768 - 16011802
Alignment:
Q  161 tgttcgttttctgcttctgcttcggatttgtgtgt 195  Q
    |||||||||||||||||||||||||||||| ||||    
T  16011768 tgttcgttttctgcttctgcttcggatttgggtgt 16011802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 41985562 - 41985501
Alignment:
Q  260 tgtgggaactgtgtttttcacttggatcaaggtcggctttcacctctgtctgattgtcctga 321  Q
    |||||||  ||||||||||||||||||||| || || |||| ||| ||||||||| ||||||    
T  41985562 tgtgggatgtgtgtttttcacttggatcaatgttgggtttcccctttgtctgattatcctga 41985501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 324
Target Start/End: Complemental strand, 41980788 - 41980724
Alignment:
Q  260 tgtgggaactgtgtttttcacttggatcaaggtcggctttcacctctgtctgattgtcctgaata 324  Q
    |||||||  ||| ||||||||||||||||||||||  |||| ||| |||| |||| |||||||||    
T  41980788 tgtgggatgtgtatttttcacttggatcaaggtcgtgtttcccctttgtccgattatcctgaata 41980724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 134 - 342
Target Start/End: Complemental strand, 4439917 - 4439706
Alignment:
Q  134 gatagtgttttgttcttggggaatgaatgttcgttttctgcttctgcttcggatttgtgtgttcctagaggaaattgtgttgtctttacttatggtggcg 233  Q
    ||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||  |||||| | ||| |   |    
T  4439917 gatagggttttgtttttggggaatggatgttcgttttctgcttctgcttcggatttgtgtgtttctaaagggaattgtgtcatctttattgatgat---g 4439821  T
Q  234 acttcctgtattt------tagaaagatgtggtgtgggaactgtgtttttcacttggatcaaggtcggctttcacctctgtctgattgtcctgaatattt 327  Q
     ||||||  ||||      || ||| |||   | |||||||||||||||| |||||||||||||   |||||| ||| |||||||||||||||| |||||    
T  4439820 ccttcctcaattttaatggtaaaaacatgcaatatgggaactgtgtttttgacttggatcaaggaaagctttcgcctttgtctgattgtcctgactattt 4439721  T
Q  328 taccttgttctggcc 342  Q
    || ||||||||||||    
T  4439720 taacttgttctggcc 4439706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 198
Target Start/End: Complemental strand, 235324 - 235206
Alignment:
Q  80 gtgtttatgcttgatgagtaggagatgaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgcttctg 179  Q
    ||||||| |||| ||||  |||||| ||||||||||||||   ||| |||||||||||| ||||| |||||||||     ||||||||||||||||||||    
T  235324 gtgtttaagcttaatgaaaaggagaagaagtgggtgaagttggcaaatttaggggatagagttttcttcttggggttgctatgttcgttttctgcttctg 235225  T
Q  180 cttcggatttgtgtgttcc 198  Q
    |||||||||||||||||||    
T  235224 cttcggatttgtgtgttcc 235206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 131 - 342
Target Start/End: Complemental strand, 4428691 - 4428477
Alignment:
Q  131 ggggatagtgttttgttcttggggaatgaatgttcgttttctgcttctgcttcggatttgtgtgttcctagaggaaattgtgttgtctttacttatggtg 230  Q
    |||||||| |||||||| |||||||||| ||||| ||||||||| |||||||| || |||| |||| ||| ||| ||||||||  |||||| | ||| ||    
T  4428691 ggggatagggttttgtttttggggaatggatgtttgttttctgcctctgcttctgagttgtctgttactaaagggaattgtgtcatctttattgatgatg 4428592  T
Q  231 gcgacttcctgt---attttagaaagatgtggtgtgggaactgtgtttttcacttggatcaaggtcggctttcacctctgtctgattgtcctgaatattt 327  Q
     |  | |||  |   ||| || ||| |||   | |||||||||||||||| ||||||||||| | | |||| | ||| ||||||||||||| ||||||||    
T  4428591 ccttcctccactttaattgtaaaaacatgcaatatgggaactgtgtttttgacttggatcaacgccagcttacgcctttgtctgattgtccggaatattt 4428492  T
Q  328 taccttgttctggcc 342  Q
    || ||||||||||||    
T  4428491 taacttgttctggcc 4428477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 18991267 - 18991206
Alignment:
Q  128 ttaggggatagtgttttgttcttggggaatgaatgttcgttttctgcttctgcttcggattt 189  Q
    |||||| |||| ||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  18991267 ttagggaatagggttttgttcttggggaatggatgttcgttttctgcttctgcttctgattt 18991206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 99 - 213
Target Start/End: Original strand, 8814386 - 8814500
Alignment:
Q  99 aggagatgaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgcttctgcttcggatttgtgtgttcc 198  Q
    |||||| ||||||||||||||   | | |||||||||||| |||||||| ||||||      ||||| |||||||||||||||| |||||||||||||||    
T  8814386 aggagaagaagtgggtgaagttggcgaatttaggggatagagttttgtttttggggtccttgtgttcattttctgcttctgctttggatttgtgtgttcc 8814485  T
Q  199 tagaggaaattgtgt 213  Q
     | ||| ||||||||    
T  8814486 caaagggaattgtgt 8814500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 231673 - 231589
Alignment:
Q  99 aggagatgaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgcttctgcttc 183  Q
    |||||||||||||||||||||   | | |||||||||||  |||||||||||||||     |||||| |||||||||||||||||    
T  231673 aggagatgaagtgggtgaagttggctaatttaggggatatagttttgttcttggggtccctatgttcattttctgcttctgcttc 231589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 251448 - 251516
Alignment:
Q  129 taggggatagtgttttgttcttggggaatgaatgttcgttttctgcttctgcttcggatttgtgtgttc 197  Q
    |||||||||| |||||||||||||||     |||||| ||||||| |||||| ||||||||||||||||    
T  251448 taggggatagagttttgttcttggggtggctatgttcattttctgtttctgcatcggatttgtgtgttc 251516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 213
Target Start/End: Original strand, 20694304 - 20694439
Alignment:
Q  78 atgtgtttatgcttgatgagtaggagatgaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgcttc 177  Q
    ||||||| | |||||||||  |||||| ||| |||||||  |  |||| ||| |||||||| |||||||| |||||||||| ||||||||||||||||||    
T  20694304 atgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttttctgcttc 20694403  T
Q  178 tgcttcggatttgtgtgttcctagaggaaattgtgt 213  Q
    ||||||||||||||||||| | | ||| ||||||||    
T  20694404 tgcttcggatttgtgtgttgccaaagggaattgtgt 20694439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 20694463 - 20694544
Alignment:
Q  261 gtgggaactgtgtttttcacttggatcaaggtcggctttcacctctgtctgattgtcctgaatattttaccttgttctggcc 342  Q
    |||| ||||||||||| || |||||||||| ||||||||||||| |||| |||| |||||||||||||| ||||||||||||    
T  20694463 gtggtaactgtgttttccatttggatcaagatcggctttcacctttgtccgattatcctgaatattttaacttgttctggcc 20694544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 74 - 213
Target Start/End: Complemental strand, 7046956 - 7046817
Alignment:
Q  74 gttgatgtgtttatgcttgatgagtaggagatgaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctg 173  Q
    |||||| |||||| |||| ||||| |||||| |||||||||||||| ||| | |||||||||||  ||||||||||||||||   |||||||||||||||    
T  7046956 gttgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttcttggggataaaatgttcgttttctg 7046857  T
Q  174 cttctgcttcggatttgtgtgttcctagaggaaattgtgt 213  Q
    |||||  ||| ||||||| |||| | | ||| ||||||||    
T  7046856 cttctttttcagatttgtatgttgccaaagggaattgtgt 7046817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 75 - 226
Target Start/End: Complemental strand, 7041612 - 7041461
Alignment:
Q  75 ttgatgtgtttatgcttgatgagtaggagatgaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgc 174  Q
    ||||| ||||||  ||| ||||| |||||| ||||||||||||||  || | |||||||||||| ||||||||||||||  | | ||||||||| ||||     
T  7041612 ttgatttgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgt 7041513  T
Q  175 ttctgcttcggatttgtgtgttcctagaggaaattgtgttgtctttacttat 226  Q
    |||||||||||||||||| ||| | | ||| ||||||||  |||||| ||||    
T  7041512 ttctgcttcggatttgtgcgttgccaaagggaattgtgtcatctttagttat 7041461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 154
Target Start/End: Complemental strand, 9170933 - 9170854
Alignment:
Q  75 ttgatgtgtttatgcttgatgagtaggagatgaagtgggtgaagtcaacaactttaggggatagtgttttgttcttgggg 154  Q
    ||||| |||||| |||| ||||| |||||| |||||||||||| | ||| | |||||||||||| |||||||||||||||    
T  9170933 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 9170854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 75 - 196
Target Start/End: Complemental strand, 7012936 - 7012809
Alignment:
Q  75 ttgatgtgtttatgcttgatgagtaggagatgaagtgggtgaagtcaacaactttaggggatagtgttttgttctt------ggggaatgaatgttcgtt 168  Q
    ||||| |||||| |||| ||||| |||||| ||||||||||||||  |||| |||||| |||||  ||||||||||      ||||   | |||||||||    
T  7012936 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttggggttggggttggtatgttcgtt 7012837  T
Q  169 ttctgcttctgcttcggatttgtgtgtt 196  Q
    |||||| | |||||||||||||||||||    
T  7012836 ttctgcctgtgcttcggatttgtgtgtt 7012809  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 75 - 196
Target Start/End: Complemental strand, 7025872 - 7025745
Alignment:
Q  75 ttgatgtgtttatgcttgatgagtaggagatgaagtgggtgaagtcaacaactttaggggatagtgttttgttctt------ggggaatgaatgttcgtt 168  Q
    ||||| |||||| |||| ||||| |||||| ||||||||||||||  || | |||||| ||||| |||||||||||      ||||   | |||||||||    
T  7025872 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttcttggggttggggttggtatgttcgtt 7025773  T
Q  169 ttctgcttctgcttcggatttgtgtgtt 196  Q
    |||||||| |||||| ||||||||||||    
T  7025772 ttctgcttgtgcttcagatttgtgtgtt 7025745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 154
Target Start/End: Complemental strand, 7029929 - 7029850
Alignment:
Q  75 ttgatgtgtttatgcttgatgagtaggagatgaagtgggtgaagtcaacaactttaggggatagtgttttgttcttgggg 154  Q
    ||||| |||||| |||| ||||| |||||| ||||||||||||||  || | ||| |||||||| |||||||||||||||    
T  7029929 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttcttgggg 7029850  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 7041420 - 7041357
Alignment:
Q  279 acttggatcaaggtcggctttcacctctgtctgattgtcctgaatattttaccttgttctggcc 342  Q
    |||||||||||||||||| ||| ||||| ||||||| |||||||||||  | ||||||||||||    
T  7041420 acttggatcaaggtcggcattcgcctctatctgattatcctgaatattccaacttgttctggcc 7041357  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 154
Target Start/End: Original strand, 9159495 - 9159574
Alignment:
Q  75 ttgatgtgtttatgcttgatgagtaggagatgaagtgggtgaagtcaacaactttaggggatagtgttttgttcttgggg 154  Q
    ||||| |||||| |||| | ||| |||||| |||||||||||| | ||| | |||||||||||| |||||||||||||||    
T  9159495 ttgatttgtttaagcttaacgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 9159574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 342
Target Start/End: Original strand, 213255 - 213327
Alignment:
Q  270 gtgtttttcacttggatcaaggtcggctttcacctctgtctgattgtcctgaatattttaccttgttctggcc 342  Q
    ||||||| ||||||||||||||||| |||||| || ||||| ||| |||||||| ||  | ||||||||||||    
T  213255 gtgttttgcacttggatcaaggtcgactttcatctgtgtctaattctcctgaattttccaacttgttctggcc 213327  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 191
Target Start/End: Complemental strand, 33541762 - 33541652
Alignment:
Q  81 tgtttatgcttgatgagtaggagatgaagtgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgcttctgc 180  Q
    |||||| |||| ||||| |||||| | |||||||||||| ||  | |||||| |||| |||||||||||| |||  ||| ||||| |||||||| |||||    
T  33541762 tgtttaagcttaatgagaaggagacggagtgggtgaagttaaagagtttaggagatattgttttgttcttaggggctgactgttccttttctgcatctgc 33541663  T
Q  181 ttcggatttgt 191  Q
    ||| |||||||    
T  33541662 ttctgatttgt 33541652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 213
Target Start/End: Complemental strand, 18571219 - 18571086
Alignment:
Q  83 tttatgcttgatgagtaggagatgaagtgggtgaagtcaacaactttaggggatag---tgttttgttcttggggaatgaatgttcgttttctgcttctg 179  Q
    |||| |||||||||| |||||| |||||||||||| |  || | |||||||||||    |||||||||||| || |  | | |||| ||||||  |||||    
T  18571219 tttaagcttgatgagaaggagaagaagtgggtgaaattgacgagtttaggggatacagttgttttgttcttaggcatggcaggttctttttctatttctg 18571120  T
Q  180 cttcggatttgtgtgttcctagaggaaattgtgt 213  Q
    ||||||||||||||||| | | ||| ||||||||    
T  18571119 cttcggatttgtgtgtttccaaagggaattgtgt 18571086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 44688820 - 44688901
Alignment:
Q  110 tgggtgaagtcaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgcttctgcttcggatttgt 191  Q
    ||||| |||| ||| | ||||||| ||||  ||||||||||||||||||||| ||| |||||| || |||||||||||||||    
T  44688820 tgggtaaagttaacgagtttagggaatagaattttgttcttggggaatgaatattcattttctactactgcttcggatttgt 44688901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 318
Target Start/End: Original strand, 13170820 - 13170878
Alignment:
Q  260 tgtgggaactgtgtttttcacttggatcaaggtcggctttcacctctgtctgattgtcc 318  Q
    |||||||  ||||||||||||||||||||| | |||||||| ||| | |||||||||||    
T  13170820 tgtgggatgtgtgtttttcacttggatcaatgccggctttcccctttatctgattgtcc 13170878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 342
Target Start/End: Original strand, 450315 - 450387
Alignment:
Q  270 gtgtttttcacttggatcaaggtcggctttcacctctgtctgattgtcctgaatattttaccttgttctggcc 342  Q
    |||||||||||||||||||||||||| |||||||  ||||||||| ||| || ||||| |  |||||||||||    
T  450315 gtgtttttcacttggatcaaggtcgggtttcacccttgtctgattatccggattatttcaagttgttctggcc 450387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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