View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10479_low_6 (Length: 318)
Name: NF10479_low_6
Description: NF10479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10479_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 55001480 - 55001186
Alignment:
| Q |
18 |
catgggattaatgaaggaaattgaaattcttttggacatacacaaatcgaaacagtcagattcaatttcgtccc-ttgccactacacccacatttctttt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
55001480 |
catgggattaatgaaggaaattgaaattcttttggacatacacaaatcgaaacagtcagattcaatttcgtccccttgccactacacccacatttctttt |
55001381 |
T |
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| Q |
117 |
aaatctgcacattttgaatcaaaagggagttagtattctcaaaaatacacacatggatctttagaacccaagcaaataccatagtcatctatactatgct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55001380 |
aaatctgcacattttgaatcaaaagggagttagtattctcaaaaatacacacatggatctttagaacccaagcaaataccatagtcatctatactatgct |
55001281 |
T |
|
| Q |
217 |
gttaatttatgctttgccaattaaagaattattctcctctgacgtataaaggcttagaaatttgaggttggttcaagagtataatgtctctgctc |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
55001280 |
gttaatttatgctttgccaattaaagaattattctcctctgacgtataaaggcttagaaatttgaggttggttcaagagtataatgtctatgctc |
55001186 |
T |
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