View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10479_low_7 (Length: 311)
Name: NF10479_low_7
Description: NF10479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10479_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 268
Target Start/End: Complemental strand, 3684552 - 3684292
Alignment:
| Q |
9 |
agcacagagcagcattcatggcagaagcagaccggtctcaactccatggacttcaccacgggagaataatgaacccaacaatcgtggctactttgactat |
108 |
Q |
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| T |
3684552 |
agcacacagcagcattcatggcagaagcagaccggtctcaactccatggacttcaccacgggagaataatgaacccaacaatcgtggctactatgactat |
3684453 |
T |
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| Q |
109 |
ggctacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg-nnnnnnncctcattctcagcaagttgtccacctcagattcgtcgttacttttgaa |
207 |
Q |
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| T |
3684452 |
gggtacatgtaccctaaaaaggtcgttgctatcacgtgccatggaaaaaaaacttcattctcagcaagttgtccacctcagattcgtcgttacttttgaa |
3684353 |
T |
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| Q |
208 |
aaatggtgatgagaattggaaggtgttctctgtcatgtcagcgaaatgggaagatatgtgc |
268 |
Q |
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| T |
3684352 |
aaatggtgatgagaattggaaggcgttctctgtcatgtcagcgaaatgggaagacatgtgc |
3684292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 104 - 268
Target Start/End: Complemental strand, 3676292 - 3676119
Alignment:
| Q |
104 |
actatggctacatgtaccctaaaaaggtcgttgctgtcacgtgccatggnnnnnnn--cctcattctcagcaagttgtccacctcagattcgtcgttact |
201 |
Q |
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| T |
3676292 |
actatggctacatgtaccctaaaaaggtcgttgttgtcacatgccatggaaaaaacaacctcattctcagcaagttgtccacctcagattcgtcattact |
3676193 |
T |
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| Q |
202 |
tttgaaaaatgg-------tgatgagaattggaaggtgttctctgtcatgtcagcgaaatgggaagatatgtgc |
268 |
Q |
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| T |
3676192 |
tttgaaaagtggtcatgactcatgagaattggaaggtgttctctgacatgtcagcaaaatgggaagatatgtgc |
3676119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 9159140 - 9159180
Alignment:
| Q |
112 |
tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg |
152 |
Q |
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| T |
9159140 |
tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg |
9159180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 9171288 - 9171248
Alignment:
| Q |
112 |
tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg |
152 |
Q |
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| T |
9171288 |
tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg |
9171248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 7013306 - 7013266
Alignment:
| Q |
112 |
tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg |
152 |
Q |
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| T |
7013306 |
tacatgtaccctaaaaaggtcgttgttgttacgtgccatgg |
7013266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 7026242 - 7026202
Alignment:
| Q |
112 |
tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg |
152 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
7026242 |
tacatgtaccctaaaaaggtcgttgttgttacgtgccatgg |
7026202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 7047293 - 7047252
Alignment:
| Q |
111 |
ctacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg |
152 |
Q |
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| T |
7047293 |
ctacatgttccctgaaaaggtcattgctgtcacgtgccatgg |
7047252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 7041950 - 7041918
Alignment:
| Q |
120 |
ccctaaaaaggtcgttgctgtcacgtgccatgg |
152 |
Q |
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| T |
7041950 |
ccctataaaggtcgttgctgtcacgtgccatgg |
7041918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 9159225 - 9159277
Alignment:
| Q |
195 |
cgttacttttgaaaaatggtgatgagaattggaaggtgttctctgtcatgtca |
247 |
Q |
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| T |
9159225 |
cgttacttttgaaatgtggtgatgaggattggaaggtgatccctgacatgtca |
9159277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 9171203 - 9171151
Alignment:
| Q |
195 |
cgttacttttgaaaaatggtgatgagaattggaaggtgttctctgtcatgtca |
247 |
Q |
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| T |
9171203 |
cgttacttttgaaatgtggtgatgaggattggaaggtgatccctgacatgtca |
9171151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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