View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10479_low_9 (Length: 247)
Name: NF10479_low_9
Description: NF10479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10479_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 38341314 - 38341540
Alignment:
| Q |
1 |
cggaagagatgaaatatgagcaaattgaaaatttaacttcataccctacatttgtacatttacccttaaaacacataaaccgccctaaacacccttcatt |
100 |
Q |
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| T |
38341314 |
cggaagagatgaaatatgagcaaattgaaaatttaacttcatagcctacatttgtacatttacccttaaaacacataaaccgccctaaacacccttcatt |
38341413 |
T |
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| Q |
101 |
ctaacaaattaaaaaatgtccggtctaaaaagctactagtttgggaggatcaatcctactccaagttgatgtgatccggtaagaatgttc--acgggaag |
198 |
Q |
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| T |
38341414 |
ctaacaaattaaaaaatgtccggcctaaaaagctactagtttgggaggatcaatcctactccaagttgatgtgatccggtaagaatgttcatacgggaag |
38341513 |
T |
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| Q |
199 |
ttttgtttttggaaatattaggtgtaa |
225 |
Q |
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| T |
38341514 |
ttttgtttttggaaatattaggtgtaa |
38341540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 3 - 225
Target Start/End: Original strand, 38445509 - 38445733
Alignment:
| Q |
3 |
gaagagatgaaatatgagcaaattgaaaatttaacttcataccctacatttgtacatttacccttaaaacacataaaccgccctaaacacccttcattct |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38445509 |
gaagagatgaaatatgagcaaattgaaaatttaacttcatagcctacatttgtacatttacccttaaaacacataaaccgccctaaacacccttcattct |
38445608 |
T |
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| Q |
103 |
aacaaattaaaaaatgtccggtctaaaaagctactagtttgggaggatcaatcctactccaagttgatgtgatccggtaagaatgttc--acgggaagtt |
200 |
Q |
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| T |
38445609 |
aacaaattaaaaaatgtccggcctaaaaagctactagtttgggaggatcaatcctactccaagttgatgtgatccggtaagaatgttcatacgggaagtt |
38445708 |
T |
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| Q |
201 |
ttgtttttggaaatattaggtgtaa |
225 |
Q |
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| T |
38445709 |
ttgtttttggaaatattaggtgtaa |
38445733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 38472267 - 38472362
Alignment:
| Q |
21 |
caaattgaaaatttaacttcataccctacatttgtacattta-cccttaaaacacataaaccgccctaaacacccttcattctaacaaattaaaaa |
115 |
Q |
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|||||||||||||||||||||||||| |||||| ||| ||| |||| |||||| |||||| ||||||||||| || ||||||||||||| |||| |
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| T |
38472267 |
caaattgaaaatttaacttcataccccacatttatactcttacccctaaaaacatataaactaccctaaacacctttaattctaacaaatttaaaa |
38472362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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