View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1047_high_7 (Length: 303)
Name: NF1047_high_7
Description: NF1047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1047_high_7 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 12 - 303
Target Start/End: Complemental strand, 6071552 - 6071261
Alignment:
| Q |
12 |
agagacagacaattgctgagaaaacgagttcatcagatatatgaggtcaagcaatgggaagatccaaaatctctagagcttttctgccttgaagctttcg |
111 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6071552 |
agagacagacaattgctgagaaaacgagttcatcggatatatgaggtcaagcaatgggaagatccaaaatctctagagcttttctgccttgaagctttcg |
6071453 |
T |
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| Q |
112 |
tgccaagtcatccccgagagaagtatgagcatctcttgcaaagggcgatcacttatgcagggggcgttccactggcccttaaagtttttgctttacttct |
211 |
Q |
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| T |
6071452 |
tgccaagtcatccccgagagaagtatgagcatctcttgcaaagggcggtcacttatgcagggggcgttccactggcccttaaagtttttgctttacttct |
6071353 |
T |
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| Q |
212 |
tcgttcaagagagattgaattttgggagagtgcttttaagaaacttggtaagcattctaatgcgacagtgcataaagttttaaaattgagct |
303 |
Q |
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| T |
6071352 |
tcgttcaagagagattgaattttgggagagtgcttttaagaaacttggtaagcattctaatgcgacagtgcatgaagttttaaaattgagct |
6071261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 12 - 256
Target Start/End: Complemental strand, 6195835 - 6195591
Alignment:
| Q |
12 |
agagacagacaattgctgagaaaacgagttcatcagatatatgaggtcaagcaatgggaagatccaaaatctctagagcttttctgccttgaagctttcg |
111 |
Q |
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||||||||||| |||||||| | ||||| || |||||||||||||||||| |||||| |||||||||||||||||||||| ||||| ||||| || | |
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| T |
6195835 |
agagacagacagttgctgagtggaagagttgattggatatatgaggtcaagcagtgggaatatccaaaatctctagagcttttttgcctagaagcctttg |
6195736 |
T |
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| Q |
112 |
tgccaagtcatccccgagagaagtatgagcatctcttgcaaagggcgatcacttatgcagggggcgttccactggcccttaaagtttttgctttacttct |
211 |
Q |
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| T |
6195735 |
agccaagtaatccccgagagaagtatgagcatcttttgcaaagggcaatcacttatgcagggggcgttccgcttgcccttaaacttttggctttacatct |
6195636 |
T |
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| Q |
212 |
tcgttcaagagagattgaattttgggagagtgcttttaagaaact |
256 |
Q |
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| T |
6195635 |
tcgtacaagagatattgcattttgggaaagttcttttaagaaact |
6195591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 14 - 256
Target Start/End: Original strand, 37451143 - 37451385
Alignment:
| Q |
14 |
agacagacaattgctgagaaaacgagttcatcagatatatgaggtcaagcaatgggaagatccaaaatctctagagcttttctgccttgaagctttcgtg |
113 |
Q |
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||||| ||||||||||||| | ||||| || |||||||||||||||||| ||||||||||||||||||||||||||||| || || |||||||||| | |
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| T |
37451143 |
agacaaacaattgctgagaggaagagttgattggatatatgaggtcaagcactgggaagatccaaaatctctagagcttttttgtctagaagctttcgag |
37451242 |
T |
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| Q |
114 |
ccaagtcatccccgagagaagtatgagcatctcttgcaaagggcgatcacttatgcagggggcgttccactggcccttaaagtttttgctttacttcttc |
213 |
Q |
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|||||| |||| || ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||| |||| ||||||| ||||| |
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| T |
37451243 |
ccaagtaatcctcgcgagaagtatgagcatctcttgcaaaaggcaatcacttatgcagggggcgttccacttgcccttaaacttttggctttacatcttc |
37451342 |
T |
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| Q |
214 |
gttcaagagagattgaattttgggagagtgcttttaagaaact |
256 |
Q |
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| T |
37451343 |
gttcaagagagattgaattttgggtaagttctttcaagaaact |
37451385 |
T |
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