View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1047_low_10 (Length: 306)

Name: NF1047_low_10
Description: NF1047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1047_low_10
NF1047_low_10
[»] chr1 (4 HSPs)
chr1 (84-182)||(40373740-40373838)
chr1 (183-241)||(18908209-18908267)
chr1 (183-241)||(52413856-52413914)
chr1 (202-241)||(40372744-40372783)
[»] chr8 (3 HSPs)
chr8 (183-241)||(30734885-30734943)
chr8 (182-241)||(34702754-34702813)
chr8 (189-236)||(24560083-24560130)
[»] chr7 (3 HSPs)
chr7 (183-241)||(32958254-32958312)
chr7 (194-241)||(38319032-38319079)
chr7 (196-241)||(9997728-9997773)
[»] chr4 (1 HSPs)
chr4 (183-241)||(32280325-32280383)
[»] chr5 (1 HSPs)
chr5 (183-236)||(4982540-4982593)
[»] chr6 (1 HSPs)
chr6 (183-236)||(33756022-33756075)
[»] chr3 (1 HSPs)
chr3 (183-236)||(36226220-36226273)


Alignment Details
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 84 - 182
Target Start/End: Complemental strand, 40373838 - 40373740
Alignment:
Q  84 agttagtttgtttgaggggatgaattggaaaagttaaacagagtaagtgaatgcaatgcagtaaggtggttggataagtgagcaattttagaataattt 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40373838 agttagtttgtttgaggggatgaattggaaaagttaaacagagtaagtaaatgcaatgcagtaaggtggttggataagtgagcaattttagaataattt 40373740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 18908209 - 18908267
Alignment:
Q  183 tataagaggaaataaacaattaattttatatagaaagtataaatgtttaaacttctgtg 241  Q
    ||||| || |||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  18908209 tataaaagaaaataaacaattaattttatattgaaagtataaatgtttaaacttttgtg 18908267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 52413856 - 52413914
Alignment:
Q  183 tataagaggaaataaacaattaattttatatagaaagtataaatgtttaaacttctgtg 241  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||||||| |||||| ||||    
T  52413856 tataaaaggaaataaacaattaattttgtattgaaagtataaatgttcaaacttttgtg 52413914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 241
Target Start/End: Complemental strand, 40372783 - 40372744
Alignment:
Q  202 ttaattttatatagaaagtataaatgtttaaacttctgtg 241  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  40372783 ttaattttatatagaaagtataaatgtttaaacttttgtg 40372744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 30734885 - 30734943
Alignment:
Q  183 tataagaggaaataaacaattaattttatatagaaagtataaatgtttaaacttctgtg 241  Q
    ||||| ||||||||||||||||||| | ||| |||||||||||||||||||||| ||||    
T  30734885 tataaaaggaaataaacaattaattatgtattgaaagtataaatgtttaaacttttgtg 30734943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 34702813 - 34702754
Alignment:
Q  182 ttataagaggaaataaacaattaattttatatagaaagtataaatgtttaaacttctgtg 241  Q
    |||||| ||||||||||||||||||||| |||  ||| ||||||||||||||||| ||||    
T  34702813 ttataaaaggaaataaacaattaattttgtattaaaaatataaatgtttaaacttttgtg 34702754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 24560130 - 24560083
Alignment:
Q  189 aggaaataaacaattaattttatatagaaagtataaatgtttaaactt 236  Q
    ||||||||| |||| |||||| ||| ||||||||||||||||||||||    
T  24560130 aggaaataagcaataaattttgtattgaaagtataaatgtttaaactt 24560083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 241
Target Start/End: Complemental strand, 32958312 - 32958254
Alignment:
Q  183 tataagaggaaataaacaattaattttatatagaaagtataaatgtttaaacttctgtg 241  Q
    ||||| |||||||||| |||||||||| ||| |||||||||||||||||||||| ||||    
T  32958312 tataaaaggaaataaataattaattttgtattgaaagtataaatgtttaaacttttgtg 32958254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 38319079 - 38319032
Alignment:
Q  194 ataaacaattaattttatatagaaagtataaatgtttaaacttctgtg 241  Q
    |||||||||||||||| ||| |||||||||||||||||||||| ||||    
T  38319079 ataaacaattaattttgtattgaaagtataaatgtttaaacttttgtg 38319032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 9997773 - 9997728
Alignment:
Q  196 aaacaattaattttatatagaaagtataaatgtttaaacttctgtg 241  Q
    |||||||||| ||| ||| |||||||||||||||||||||| ||||    
T  9997773 aaacaattaactttgtattgaaagtataaatgtttaaacttttgtg 9997728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 32280325 - 32280383
Alignment:
Q  183 tataagaggaaataaacaattaattttatatagaaagtataaatgtttaaacttctgtg 241  Q
    ||||| ||||||||||||| ||||||| ||| |||||||||||||||||||||| ||||    
T  32280325 tataaaaggaaataaacaactaattttgtattgaaagtataaatgtttaaacttttgtg 32280383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 4982593 - 4982540
Alignment:
Q  183 tataagaggaaataaacaattaattttatatagaaagtataaatgtttaaactt 236  Q
    ||||| ||||| ||||||||||||||| ||| ||||||||||||||||||||||    
T  4982593 tataaaaggaagtaaacaattaattttgtattgaaagtataaatgtttaaactt 4982540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 33756022 - 33756075
Alignment:
Q  183 tataagaggaaataaacaattaattttatatagaaagtataaatgtttaaactt 236  Q
    ||||| |||||||||| ||| |||||| ||| |||||||||||||||| |||||    
T  33756022 tataaaaggaaataaataataaattttgtattgaaagtataaatgtttcaactt 33756075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 36226273 - 36226220
Alignment:
Q  183 tataagaggaaataaacaattaattttatatagaaagtataaatgtttaaactt 236  Q
    ||||| || |||||||||||||||||| ||| |||||||||||| |||| ||||    
T  36226273 tataaaagaaaataaacaattaattttgtattgaaagtataaatatttatactt 36226220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University