View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1047_low_14 (Length: 251)
Name: NF1047_low_14
Description: NF1047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1047_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 5910749 - 5910507
Alignment:
| Q |
1 |
taatcatcatttttaactactaacatatcctaataatatatgaaagagtaacacatttatatatatagtttgcagtcccctccatttaggcactattatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5910749 |
taatcatcatttttaactactaacatatcctaataatatatgaaagagtaacacatttacatatatagtttgcagtcccctccatttaggcactattatt |
5910650 |
T |
|
| Q |
101 |
tcagctaacattgcactttaaagatggatgtttcaaatgttaataagttgctggtgaagagagcaccatccaaaactttggtggtccgattcaatttctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5910649 |
tcagctaacattgcactttaaagatggatgtttcaaatgttaataagttgctggtgaagagagcaccatccaaaactttggtggtccgattcaatttgtt |
5910550 |
T |
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| Q |
201 |
ctgttttgccatctttctgattgtttatgcaacccttcatctc |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5910549 |
ctgttttgccatctttctgattgtttatgcaacccttcttctc |
5910507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 5915132 - 5914898
Alignment:
| Q |
1 |
taatcatcatttttaactactaacatatcctaataatatatgaaagagtaacacatttatatatatagtttgcagtcccctccattt-aggcactattat |
99 |
Q |
| |
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||||| |||| |||||||||||||| |||||||| |||||||||| | |||||| ||||||||| || |||||||||||||| ||||||| |||| |
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| T |
5915132 |
taatcctcatatttaactactaacacatcctaatt---tatgaaagagggattcatttacatatatagtgtgtagtcccctccattttaggcactgttat |
5915036 |
T |
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| Q |
100 |
ttcagcta--acattgcactttaaagatggatgtttcaaatgttaataagttgctggtgaagagagcaccatccaaaactttggtggtccgattcaattt |
197 |
Q |
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||| ||| ||||| ||||||||||||||||||||||||| || |||||| ||||||||| ||||||||||||| ||||| | | |||||||||| |
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| T |
5915035 |
ttctcctataacatttcactttaaagatggatgtttcaaatcttcataagt---tggtgaagacagcaccatccaaagctttgattatgagattcaattt |
5914939 |
T |
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| Q |
198 |
cttctgttttgccatctttctgattgtttatgcaacccttc |
238 |
Q |
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|| ||| || |||||||||| ||||||||||||||||||| |
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| T |
5914938 |
gttatgtctttccatctttctcattgtttatgcaacccttc |
5914898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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