View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1047_low_8 (Length: 329)
Name: NF1047_low_8
Description: NF1047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1047_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 9 - 171
Target Start/End: Original strand, 4654882 - 4655044
Alignment:
| Q |
9 |
caataatatctttagtttggggccaaataatcgtgaaatgtgaatatattaggatggagtgttagctggtaataagacaatgaggaaaaagttaatgtac |
108 |
Q |
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| T |
4654882 |
caataatatctttagtttggggccaaataatcgtgaaatgtgaatatattaggatggagtgttagctggtaataagacaatgaggaaaaagttaatgtac |
4654981 |
T |
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| Q |
109 |
gatttatttattatattgtccctgaaaactttaatgggtaaatatgtggtcccacaaatttaa |
171 |
Q |
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| T |
4654982 |
gatttatttattatattgtccctgaaaactttaatgagtaaatatgtggtcccacaaatttaa |
4655044 |
T |
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Target: chr8; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 169 - 329
Target Start/End: Original strand, 4656164 - 4656320
Alignment:
| Q |
169 |
taaaagtaaaaatcgactcaattaacacgaggggttctctcaatatttcaagacttccaaagataaatgaaacnnnnnnngtggtcaatatttatttata |
268 |
Q |
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|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
4656164 |
taaaagtaaaaatcgactcaattaacacgatgggttc----aatatttcaagacttccaaagataaatgaaactttttttgtggtcaatatttattttta |
4656259 |
T |
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| Q |
269 |
tggagcccatgtcccaaaataaataaattatatagaacccatgtgttatgcatgggtgata |
329 |
Q |
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| T |
4656260 |
tggagcccacgtcccaaaataaataaattatatagaacccatgtgttatgcatgggtgata |
4656320 |
T |
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