View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10480_low_1 (Length: 540)

Name: NF10480_low_1
Description: NF10480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10480_low_1
NF10480_low_1
[»] chr1 (12 HSPs)
chr1 (146-523)||(20013206-20013586)
chr1 (271-456)||(24968998-24969183)
chr1 (271-456)||(25431514-25431699)
chr1 (191-309)||(23899843-23899961)
chr1 (350-456)||(23899744-23899850)
chr1 (148-208)||(24968929-24968989)
chr1 (148-208)||(25431708-25431768)
chr1 (33-90)||(20013642-20013701)
chr1 (274-457)||(31620717-31620901)
chr1 (408-460)||(30094025-30094077)
chr1 (43-90)||(23900016-23900065)
chr1 (480-520)||(30094103-30094143)


Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 146 - 523
Target Start/End: Complemental strand, 20013586 - 20013206
Alignment:
Q  146 ccgccgccgccgtcgtatatcagtctctgacgc---aacatcaaaaagttccctcgaaaacggtcgaaatctctggcgattccgatgaccactccctaca 242  Q
    |||||||||||| | |||||||||||||| |||   ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20013586 ccgccgccgccgccatatatcagtctctgccgccgcaacataaaaaagttccctcgaaaacggtcgaaatctctggcgattccgatgaccactccctaca 20013487  T
Q  243 tattcctctaccgccgtctccgtcgacttccgattgccccatttacaaacagcttatcaaactagggttttatttgaagagagaaaaagttgatgattgt 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20013486 tattcctctaccgccgtctccgtcgacttccgattgccccatttacaaacagcttatcaaactagggttttatttgaagagagaaaaagttgatgattgt 20013387  T
Q  343 cttcggcaactaggggattcgataaatggcttgaatgacctcgaaaaggctgacatctgttaccggaagtttctgtttaccgatctcaactcttgtggta 442  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20013386 cttcgccaactaggggattcgataaatggcttgaatgacctcgaaaaggctgacatctgttaccggaagtttctgtttaccgatctcaactcttgtggta 20013287  T
Q  443 gcggtatacttcctagccatgatgatttaatactcccaactactctcaaaggtcccttcatattgcaggtttcaatttatt 523  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20013286 gcggtatacttcctagccatgatgatttaatactcccaactactctcaaaggtcccttcatattgcaggtttcaatttatt 20013206  T

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Target: chr1; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 271 - 456
Target Start/End: Original strand, 24968998 - 24969183
Alignment:
Q  271 tccgattgccccatttacaaacagcttatcaaactagggttttatttgaagagagaaaaagttgatgattgtcttcggcaactaggggattcgataaatg 370  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  24968998 tccgattgccccatttaccaacagcttatcaaactagggttttatttgaagagagaaaaagttgttgattgtcttcgccaactaggggattcgataaatg 24969097  T
Q  371 gcttgaatgacctcgaaaaggctgacatctgttaccggaagtttctgtttaccgatctcaactcttgtggtagcggtatacttcct 456  Q
    ||||||||||||||||||||||||| ||||||| || ||||||||||||| || ||||||| ||||||||||| ||||||||||||    
T  24969098 gcttgaatgacctcgaaaaggctgaaatctgtttccagaagtttctgttttccaatctcaattcttgtggtagtggtatacttcct 24969183  T

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Target: chr1; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 271 - 456
Target Start/End: Complemental strand, 25431699 - 25431514
Alignment:
Q  271 tccgattgccccatttacaaacagcttatcaaactagggttttatttgaagagagaaaaagttgatgattgtcttcggcaactaggggattcgataaatg 370  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  25431699 tccgattgccccatttaccaacagcttatcaaactagggttttatttgaagagagaaaaagttgttgattgtcttcgccaactaggggattcgataaatg 25431600  T
Q  371 gcttgaatgacctcgaaaaggctgacatctgttaccggaagtttctgtttaccgatctcaactcttgtggtagcggtatacttcct 456  Q
    ||||||||||||||||||||||||| ||||||| || ||||||||||||| || ||||||| ||||||||||| ||||||||||||    
T  25431599 gcttgaatgacctcgaaaaggctgaaatctgtttccagaagtttctgttttccaatctcaattcttgtggtagtggtatacttcct 25431514  T

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Target: chr1; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 191 - 309
Target Start/End: Complemental strand, 23899961 - 23899843
Alignment:
Q  191 ttccctcgaaaacggtcgaaatctctggcgattccgatgaccactccctacatattcctctaccgccgtctccgtcgacttccgattgccccatttacaa 290  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| || | || ||||||||||||||||||||||||||||| |    
T  23899961 ttccctcgaaaacagtcgaaatctctggcgattccgatgaccactccctacatactcctccacagtcggctccgtcgacttccgattgccccatttacca 23899862  T
Q  291 acagcttatcaaactaggg 309  Q
    |||||||||||||||||||    
T  23899861 acagcttatcaaactaggg 23899843  T

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Target: chr1; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 350 - 456
Target Start/End: Complemental strand, 23899850 - 23899744
Alignment:
Q  350 aactaggggattcgataaatggcttgaatgacctcgaaaaggctgacatctgttaccggaagtttctgtttaccgatctcaactcttgtggtagcggtat 449  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||| || ||||||| |||||||| || |||||    
T  23899850 aactaggggattcgataaatggcttgaatgacctcgaaaaggctgaaatctgtttccagaagtttctgttttccaatctcaattcttgtggcagtggtat 23899751  T
Q  450 acttcct 456  Q
    |||||||    
T  23899750 acttcct 23899744  T

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Target: chr1; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 24968929 - 24968989
Alignment:
Q  148 gccgccgccgtcgtatatcagtctctgacgcaacatcaaaaagttccctcgaaaacggtcg 208  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  24968929 gccgccgccgtcgtagatcagtctctgccgcaacatcaaaaagttccctcgaaaacggtcg 24968989  T

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Target: chr1; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 25431768 - 25431708
Alignment:
Q  148 gccgccgccgtcgtatatcagtctctgacgcaacatcaaaaagttccctcgaaaacggtcg 208  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  25431768 gccgccgccgtcgtagatcagtctctgccgcaacatcaaaaagttccctcgaaaacggtcg 25431708  T

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Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 20013701 - 20013642
Alignment:
Q  33 aaaagaaggagcaaaaccgttaatattggaagaaatat--acacacacagtgtacaactg 90  Q
    ||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  20013701 aaaagaaggagcaaaaccgttaagattggaagaaatatgcacacacacagtgtacaactg 20013642  T

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Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 457
Target Start/End: Complemental strand, 31620901 - 31620717
Alignment:
Q  274 gattgccccatttacaaacagcttatcaaactagggttttatttgaagagagaaaaagttgatgattgtcttcggcaactaggggattcgataaatggct 373  Q
    ||||||||| ||||| |||| ||| ||||||  |||||||||||||||||||| || ||||| ||||||||| | | | |||||| ||||||||||| ||    
T  31620901 gattgccccgtttaccaacaccttgtcaaacgggggttttatttgaagagagagaaggttgaggattgtctttgccgattagggggttcgataaatgact 31620802  T
Q  374 tgaatgacc-tcgaaaaggctgacatctgttaccggaagtttctgtttaccgatctcaactcttgtggtagcggtatacttccta 457  Q
    || ||| ||   ||||||    |  | |||| ||| |||||||||||| |||||||| | |||||||||||  ||||||||||||    
T  31620801 tggatgtccggggaaaagaaaaaagtttgtttccgaaagtttctgttttccgatctccattcttgtggtagtcgtatacttccta 31620717  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 408 - 460
Target Start/End: Original strand, 30094025 - 30094077
Alignment:
Q  408 gaagtttctgtttaccgatctcaactcttgtggtagcggtatacttcctagcc 460  Q
    ||||||||||||| |||||||| | ||||||||||| ||||||||||||||||    
T  30094025 gaagtttctgttttccgatctccattcttgtggtagtggtatacttcctagcc 30094077  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 23900065 - 23900016
Alignment:
Q  43 gcaaaaccgttaatattggaagaaatat--acacacacagtgtacaactg 90  Q
    |||||||||| || ||||||||||||||  ||||||||||||||||||||    
T  23900065 gcaaaaccgtcaagattggaagaaatatgcacacacacagtgtacaactg 23900016  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 520
Target Start/End: Original strand, 30094103 - 30094143
Alignment:
Q  480 aactactctcaaaggtcccttcatattgcaggtttcaattt 520  Q
    |||||||||| | ||| ||||||||||||||||||||||||    
T  30094103 aactactctcgatggttccttcatattgcaggtttcaattt 30094143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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