View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10480_low_2 (Length: 514)
Name: NF10480_low_2
Description: NF10480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10480_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 11 - 508
Target Start/End: Original strand, 1453999 - 1454495
Alignment:
| Q |
11 |
agaacctgtggctgatatttcatgatcaatggctcaaaactatccatgactttagtggctgtgttcaaggcttccgagatggcatctgtgtctacctgta |
110 |
Q |
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| T |
1453999 |
agaacctgaggctgatatttcatgatcaatggctcaaaactatccatgactttagtggctgtgttcaaggcttcagagatggcatctgtgtctacctgta |
1454098 |
T |
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| Q |
111 |
aagagaattaaattagaagaaagtatcaannnnnnnnnnnnnnnnnnnatgagttatgtacacaaatatagtagcattaccttgagaccatgagttaagg |
210 |
Q |
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| T |
1454099 |
aagagaattaaattagaagaaagtatccattttttttattctttttt-atgagttatgtacacaaatatagtagcattaccttgagaccatgagttaagg |
1454197 |
T |
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| Q |
211 |
gcacgatggtggataatgctaacaacttctttgttaatttgtctattgcttcttgattctttctttccaattttttccattcaattagaagggagagttg |
310 |
Q |
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| T |
1454198 |
gcacgatggtggataatgctaacaacttctttgttaatttgtctattgattcttgattctttctttccaattttttccattcaattagaagggagagttg |
1454297 |
T |
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| Q |
311 |
accaatcagaatatgttgaagcttgatcgtatgcttgaccttttgtacttctattctcttttgtattatgatctttcttagcattaggattccaagccat |
410 |
Q |
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| T |
1454298 |
accaatcagaatatgttgaagcttgatcgtatgtttgaccttttgtacttctattctcttttgtattatgatctttcttagcattaggattccaagccat |
1454397 |
T |
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| Q |
411 |
acagaaaacaagtttatctgaaatttaaggaaaaagtaacagtagaaaaaattaaactcgattagaaagagtaaagtgccaagaagaaggataacaca |
508 |
Q |
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| T |
1454398 |
acagaaaacaagtttatctgaaatttaaggaaaaagtaacagtagagaaaattaaactcgattagaaagagtaaagtgccaagaagaaggataacaca |
1454495 |
T |
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