View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10480_low_3 (Length: 363)
Name: NF10480_low_3
Description: NF10480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10480_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 50 - 342
Target Start/End: Original strand, 9329354 - 9329649
Alignment:
| Q |
50 |
acaagtgatcaacatcaaatcaaaataacataacataacaaaccaaattcaaccactttttccagcatcttttcatttgaatatgtaattaagaattatg |
149 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9329354 |
acaagtggtcaacatcaaatcaaaataacataacataacaaaccaaattcaaccacttttcccagcatcttttcatttgaatatgtaattaagaattatg |
9329453 |
T |
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| Q |
150 |
agttcattgctaaacatgttgtctggataaaa---tgtttgcttgattcatagaaggctagtagtattatggactccaacacggattataaaacttcaat |
246 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9329454 |
agttcaatgctaaacatgttgtctggataaaaaaatgtttgcttgattcatagaaggctagtagtattatggactccaacacggattataaaacttcaat |
9329553 |
T |
|
| Q |
247 |
ttctgatttctcagttaatctagctgcatcacttagtctaagacatgaaagttgaaacataacttctcttaatacctttggaacaaccacctctga |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9329554 |
ttctgatttctcagttaatctagctgcatcacttagtctaagacatgaaagttgaaacataacttctcttaatacctttggaacaaccacctctga |
9329649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 50 - 176
Target Start/End: Original strand, 9335160 - 9335286
Alignment:
| Q |
50 |
acaagtgatcaacatcaaatcaaaataacataacataacaaaccaaattcaaccactttttccagcatcttttcatttgaatatgtaattaagaattatg |
149 |
Q |
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| T |
9335160 |
acaagtggtcaacatcaaatcaaaataacataacataacaaaccaaattcaaccactttttccagcatcttttcatctgaatatgtaattaagaattaga |
9335259 |
T |
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| Q |
150 |
agttcattgctaaacatgttgtctgga |
176 |
Q |
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| T |
9335260 |
aattcattgctaaacatgttgtctgga |
9335286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 9334659 - 9334711
Alignment:
| Q |
1 |
agatgtaataaaggatgaactatcaaaacctaatcaaactaaacgagaaacaa |
53 |
Q |
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| T |
9334659 |
agatgtaataaaggatgaactatcaaaacctaatcaaagtaaacgacaaacaa |
9334711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 9336120 - 9336184
Alignment:
| Q |
173 |
tggataaaatgtttgcttgattcatagaaggctagtagtattatggactccaacacggattataaaac |
240 |
Q |
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| T |
9336120 |
tggataaaatgtttgcttgattcatagaaggc---tagcattatggactacaacacggagtatcaaac |
9336184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 93
Target Start/End: Original strand, 9339914 - 9339949
Alignment:
| Q |
58 |
tcaacatcaaatcaaaataacataacataacaaacc |
93 |
Q |
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| T |
9339914 |
tcaacatcaaatcaaaataacatagcataacaaacc |
9339949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 231059 - 231111
Alignment:
| Q |
88 |
caaaccaaattcaaccactttttccagcatcttttcatttgaatatgtaatta |
140 |
Q |
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| T |
231059 |
caaaccaaattccacctcgttttccagcatcttttcatatgaatgtgtaatta |
231111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 252113 - 252067
Alignment:
| Q |
94 |
aaattcaaccactttttccagcatcttttcatttgaatatgtaatta |
140 |
Q |
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| T |
252113 |
aaattccacctcattttccagcatcttttcatatgaatatgtaatta |
252067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 153
Target Start/End: Complemental strand, 8814898 - 8814852
Alignment:
| Q |
107 |
ttttccagcatcttttcatttgaatatgtaattaagaattatgagtt |
153 |
Q |
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||||||||||||||||||| |||||||||||||| || ||| ||||| |
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| T |
8814898 |
ttttccagcatcttttcatatgaatatgtaattaggacttaagagtt |
8814852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 213842 - 213802
Alignment:
| Q |
53 |
agtgatcaacatcaaatcaaaataacataacataacaaacc |
93 |
Q |
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|||| |||||||| ||||||||||||||||||||| ||||| |
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| T |
213842 |
agtggtcaacatcgaatcaaaataacataacataaaaaacc |
213802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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