View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10480_low_6 (Length: 273)
Name: NF10480_low_6
Description: NF10480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10480_low_6 |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 28 - 260
Target Start/End: Original strand, 27511189 - 27511426
Alignment:
| Q |
28 |
gtagtttccccatccttcattttaggcaaaacaaccttgagcacactacatttcatcttagctctaatctgatcaatcttgtaagatttccct-----at |
122 |
Q |
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| T |
27511189 |
gtagtttccccatcctttattttaggcaaaacaaccttgagcacactacatttcatcctagctctaatctgatcgatcttgtaatgtctcccagttaaat |
27511288 |
T |
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| Q |
123 |
caagcgtgcaagagggtttacgaccacctctctcgcctttaatgctaagagtgttctgatacacattgatattcacatcttccttcaagcgttcaggcat |
222 |
Q |
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| T |
27511289 |
catgcgtgcaagaggattcacgaccacctctctcgcctttaatgctaagagtattctgatacacgttgatattcacatcttccttaaagcgtccaggcat |
27511388 |
T |
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| Q |
223 |
atacatacggataagcatataatcctctgtctctctcc |
260 |
Q |
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| T |
27511389 |
atacatacggataagcatataatcctctgtctctctcc |
27511426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 41570570 - 41570501
Alignment:
| Q |
42 |
cttcattttaggcaaaacaaccttgagcacactacatttcatcttagctctaatctgatcaatcttgtaa |
111 |
Q |
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| T |
41570570 |
cttcattttaggtacaataaccttaagcacaccatttttcatctcagctttaatctgatcaatcttgtaa |
41570501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 41 - 224
Target Start/End: Original strand, 33702282 - 33702465
Alignment:
| Q |
41 |
ccttcattttaggcaaaacaaccttgagcacactacatttcatcttagctctaatctgatcaatcttgtaagatttccct-----atcaagcgtgcaaga |
135 |
Q |
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| T |
33702282 |
ccttcattttaggcaaaacaaccttgagcacactacatttcatcttagctctaatctgatcaatcttgtaagatttccctgttaaatcaagtgtgcaaga |
33702381 |
T |
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| Q |
136 |
gggtttacgaccacctctctcgcctttaatgctaagagtgttctgatacacattgatattcacatcttccttcaagcgttcaggcatat |
224 |
Q |
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| T |
33702382 |
ggatttacgaccacctctctcgcctttaatgctaagagtgt-----tacacattgatattcacatcttccttcaagcgttcaggcatat |
33702465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 25 - 257
Target Start/End: Complemental strand, 78031 - 77806
Alignment:
| Q |
25 |
tctgtagtttccccatccttcattttaggcaaaacaaccttgagcacactacatttcatcttagctctaatctgatcaatcttgtaagatttccc----- |
119 |
Q |
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| T |
78031 |
tctgtagtttccccatccttcattttaggcaaaacaaccttgagcacactacatttcatcttagctgtaatctaataaatcttgtaatgtttcccggtta |
77932 |
T |
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| Q |
120 |
tatcaagcgtgcaagagggtttacgaccacctctctcgcctttaatgctaagagtgttctgatacacattgatattcacatcttccttcaagcgttcagg |
219 |
Q |
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| T |
77931 |
aatcaagtctgctagaggatttacgaccacctcgctcacctttaatgctaagagtgttctgata------------cacatcttccttaatgcgtccagg |
77844 |
T |
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| Q |
220 |
catatacatacggataagcatataatcctctgtctctc |
257 |
Q |
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| T |
77843 |
catatacatacgtataagcatataatcctgtctctctc |
77806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 247084 - 247013
Alignment:
| Q |
40 |
tccttcattttaggcaaaacaaccttgagcacactacatttcatcttagctctaatctgatcaatcttgtaa |
111 |
Q |
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|||||||| ||||||| ||||||||| ||||||| |||||||| |||| |||||||||||||||||||| |
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| T |
247084 |
tccttcatcttaggcacaacaaccttaagcacaccgtttttcatctcagctttaatctgatcaatcttgtaa |
247013 |
T |
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