View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10480_low_7 (Length: 267)
Name: NF10480_low_7
Description: NF10480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10480_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 139 - 256
Target Start/End: Complemental strand, 12844663 - 12844546
Alignment:
| Q |
139 |
ttcttcttttccctttcttcaaagcataagtccaactcaaaataaaagcatcaataaaatctatcaagataaatcttcaacatgctcatcaccacttttt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12844663 |
ttcttcttttccctttcttcaaagcataagtccaactcaaaataaaagcatcaataaaatctatcaagataaatattcaacatgctcatcaccacttttt |
12844564 |
T |
|
| Q |
239 |
tgtattctttttcttcat |
256 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
12844563 |
tgtattctttttcttcat |
12844546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 12844799 - 12844734
Alignment:
| Q |
6 |
aaaacttgcttcatctctcattcttcaaaacatagaac---agtacatgatccaactcacaaaatg |
68 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12844799 |
aaaacttgcttcatctctcattcttcaaaacatagaacagtagtacatgatccaactcacaaaatg |
12844734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 256
Target Start/End: Complemental strand, 25098824 - 25098790
Alignment:
| Q |
222 |
gctcatcaccacttttttgtattctttttcttcat |
256 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
|
|
| T |
25098824 |
gctcattaccacttttttgtattctttttcttcat |
25098790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 256
Target Start/End: Complemental strand, 50438753 - 50438719
Alignment:
| Q |
222 |
gctcatcaccacttttttgtattctttttcttcat |
256 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
|
|
| T |
50438753 |
gctcattaccacttttttgtattctttttcttcat |
50438719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University