View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10481A_high_1 (Length: 707)
Name: NF10481A_high_1
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 14 - 416
Target Start/End: Complemental strand, 5337691 - 5337288
Alignment:
| Q |
14 |
agaagcagaagatgatgaagaagaagcagcaggttcgtcgtttttctaattttaatattaaaatcagcgtcagcgaaaaacttgaagnnnnnnn-gttac |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5337691 |
agaagcagaagatgatgaagaagaagcagcaggttcgtcgtttttctaattttaatattaaaatcagcgtcagcgaaaaacttgaagaaaaaaaagttac |
5337592 |
T |
|
| Q |
113 |
agtaaataagctgaagtcaacgaaactaacctttcccatctgccaccgttggagtatattgattgatgaatagcagaatgtttaaacttgaagattggaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5337591 |
agtaaataagctgaagtcaacgaaactaacctttcccatctgccaccgttggagtatattgattgatgaatagcagaatgtttaaacttgaagattggaa |
5337492 |
T |
|
| Q |
213 |
tctgattttgaacctgaatttgaataaaggatggagtattgtaaatgcttcccctgctaaaaaatgtcacctacatacataaagaaaatggaagtcaacg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5337491 |
tctgattttgaacctgaatttgaataaaggatggagtattgtaaatgcttcccctgctaaaaaatgtcacctacatacataaagaaaatggaagtcaacg |
5337392 |
T |
|
| Q |
313 |
agtttggtgtattattgccgtatctgtttggtagcatatgtctttgcatacctcagtgtctatataaaacaatcatatccaatataacaaatcatttctt |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
5337391 |
agtttggtgtattattgccgtatctgtttggtagcatatgtctttgcatacctcagtgtatatataaaacaatcatgtccaatataacaaatcatttttt |
5337292 |
T |
|
| Q |
413 |
tttt |
416 |
Q |
| |
|
|||| |
|
|
| T |
5337291 |
tttt |
5337288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 392 - 684
Target Start/End: Complemental strand, 5337166 - 5336877
Alignment:
| Q |
392 |
caatataacaaatcatttcttttttggtacaaatgaaaaatcattcttattacatgcaataatagccaacttaattatttaagcatgaattatgtgtgag |
491 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5337166 |
caatataaaaaatcatttcttttttggtacaaatgaaaaatcattcttattacatgcaata---gccaacttaattatttaagcatgaattatgtgtgag |
5337070 |
T |
|
| Q |
492 |
aaagtccatctagttatttccgtatctgtttgatagttggtagtagtatatcatgtcttgcatacctcacgggttgaacttaaagcaagggttatgtgtt |
591 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5337069 |
aaagtccatctagttatttccgtatctgtttgatagttggtagtagtatatcatgtcttgcatacctcacgggttgaacttaaagcgagggttatgtgtt |
5336970 |
T |
|
| Q |
592 |
aaaacatatttcttactagacagtatggttagatatgttttttgtctctatgtaattggtattagttatttaaagttttatattagttatttt |
684 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5336969 |
aaaacatatttcttactagacagtatggttagatatgttttttgtctctatgtaattggcattagttatttaaagttttatattagttatttt |
5336877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 641 - 682
Target Start/End: Complemental strand, 5376743 - 5376702
Alignment:
| Q |
641 |
atgtaattggtattagttatttaaagttttatattagttatt |
682 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||| ||||| |
|
|
| T |
5376743 |
atgtaattgttattggttatttaaagttttatattaattatt |
5376702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 641 - 682
Target Start/End: Complemental strand, 5428488 - 5428447
Alignment:
| Q |
641 |
atgtaattggtattagttatttaaagttttatattagttatt |
682 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||| ||||| |
|
|
| T |
5428488 |
atgtaattgctattagttatttagagttttatattatttatt |
5428447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University