View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_high_17 (Length: 283)
Name: NF10481A_high_17
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_high_17 |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 14 - 283
Target Start/End: Complemental strand, 30750730 - 30750461
Alignment:
| Q |
14 |
gaacataccccaacaagcatcaataaataatatagcttctctaaattcttgaaaccctaacttcaatccttgcaccaattccttgcttcttgctcaccca |
113 |
Q |
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| T |
30750730 |
gaacataccccaacaagcatcaataaataatatagcttctctaaattcttgaaaccctaacttgaatccttgcaccaattccttgcttcttcctcaccca |
30750631 |
T |
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| Q |
114 |
ttaacatttaaatcttctttaggtcgagtgagaggataagaaatatggataggagtgtttataattctggtttttaattacaaatttgaggcacaaacaa |
213 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30750630 |
ttaacatttaaatcttctttaggtcgagtgagacggtaagaaatatggataggagtgtttataattctggtttttaattacaaatttgaggcacaaacaa |
30750531 |
T |
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| Q |
214 |
tctaaaacacatgcatccaatcttcttagtgggaggtgaagattagatggttctcccatggtgatgaaga |
283 |
Q |
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| T |
30750530 |
tctaaaacacatgcatccaactttcttagtgggaggtgaagattagatggttctcccatggtgatgaaga |
30750461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 30760624 - 30760552
Alignment:
| Q |
14 |
gaacataccccaacaagcatcaataaataatatagcttctctaaattcttgaaaccctaacttcaatccttgc |
86 |
Q |
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| T |
30760624 |
gaacataccccaacaagcatcaataaataatatagcttctctaaattcttgaaaccctaacttcaatccttgc |
30760552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 241546 - 241500
Alignment:
| Q |
79 |
atccttgcaccaattccttgcttcttgctcacccattaacatttaaa |
125 |
Q |
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| T |
241546 |
atccttgcacaaattccttgcttcttcctcacccatcaacatttaaa |
241500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 14575829 - 14575875
Alignment:
| Q |
79 |
atccttgcaccaattccttgcttcttgctcacccattaacatttaaa |
125 |
Q |
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| T |
14575829 |
atccttgcacaaattccttgcttcttcctcacccatcaacatttaaa |
14575875 |
T |
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