View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10481A_high_18 (Length: 271)
Name: NF10481A_high_18
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_high_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 247
Target Start/End: Complemental strand, 3701422 - 3701182
Alignment:
| Q |
7 |
tttggtgttccggatagagtgcattggaaatttggaaaaatatccgagaagacatgtcatttttcaatacaaagtttttgttatgacatagctctcagag |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||| ||| | || |||||||||||||||||||| |||||| |
|
|
| T |
3701422 |
tttggtgttccggatagagtgcattggaaatttggaagactctccgagaagacatgtcattttccaaaagaaggtttttgttatgacatagctgtcagag |
3701323 |
T |
|
| Q |
107 |
atttaacaatattgcatttttgagttggattcgaggacatactttgattaagttgaaagatatcttttaacatctcattgaagtgctcgagtttatgtca |
206 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
3701322 |
atttaacaatgttgcattttagagttggattcgaggacatactttgattaagttgaaagatatcttttaacatctcattgtagtgcccgagtttatgtca |
3701223 |
T |
|
| Q |
207 |
aagagttaagttagaatattttaggtgaagaatttacggac |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3701222 |
aagagttaagttagaatattttaggtgaagaatttacggac |
3701182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 247
Target Start/End: Complemental strand, 3715184 - 3715143
Alignment:
| Q |
206 |
aaagagttaagttagaatattttaggtgaagaatttacggac |
247 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
3715184 |
aaagagttaacttagaatattttaggttaagaatttacggac |
3715143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University