View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_high_2 (Length: 662)
Name: NF10481A_high_2
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_high_2 |
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| [»] scaffold0027 (2 HSPs) |
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Alignment Details
Target: scaffold0027 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 52 - 340
Target Start/End: Complemental strand, 46325 - 46040
Alignment:
| Q |
52 |
tattcatttgaatcggtagataaaatcaagaacaataaaaattttgtgtcattgaaacttaaaagatgaatttgcaactaaatttacatcattgaagtca |
151 |
Q |
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| T |
46325 |
tattcatttaaatcggtagataaaatcaacaacaataaaaattttgtgtcattgaaacttaaaagatgaaattgcaactaaatttacatcattgaagtca |
46226 |
T |
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| Q |
152 |
atatcataaatcggtataataatgcctacaaaaagttacatgattaaagcgatctaaatacgcatttgaatatgtagtgttgatgtataagtgatcatta |
251 |
Q |
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| T |
46225 |
atatcataaatcggtataat---gcctacaaaaagttacatgattaaagcgatctaaatacgcatttgaatatgtagtgttgatgtataagtgatcatta |
46129 |
T |
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| Q |
252 |
gttgaaaatgagtctaaactgatatgtaaaatctaagcgcaacaaatatcgcaataaaaagaaaaccaaactgcactgaaccaagatag |
340 |
Q |
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| T |
46128 |
gttgaaaatgagtctaaactgatatgtaaaatctaagtgcaacaaatatcacaacaagaagaaaaccaaactgcactaaatcaagatag |
46040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 407 - 656
Target Start/End: Complemental strand, 45959 - 45715
Alignment:
| Q |
407 |
tcatcatataattttttcttacgnnnnnnnctcatgaaagaatttttattaaaagaaacaaagatttggaatgccgagtagcatcatccctacaaaaatg |
506 |
Q |
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| T |
45959 |
tcatcatataattttttcttac-aaaaaaactcatgaaagaatttttattaaaagaaacaaagatttggaatgccgagtagcatcttccctacaaaaatt |
45861 |
T |
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| Q |
507 |
agggagtacgtaggagtacctctatgtgataggaatcctatgctcaatttcaggctaattacatagtgactgcacccacatgcagattttttactgttca |
606 |
Q |
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| T |
45860 |
agggagta----ggagtacctctatgtgataggaatcctatgttcaatttcaggctaattacatagtgactgcacccacatgcaaattttttactgttca |
45765 |
T |
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| Q |
607 |
aacactgttttctataccagaatgatcccaaagaatcaggttcatctcag |
656 |
Q |
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| T |
45764 |
aacactgttttctataccagaatgatcccaaagaatcaggttcatgtcag |
45715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 51628989 - 51629039
Alignment:
| Q |
111 |
taaaagatgaatttgcaactaaatttacatcattgaagtcaatatcataaa |
161 |
Q |
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| T |
51628989 |
taaaagatgaatttgcaaataaattcacatcatttaagttaatagcataaa |
51629039 |
T |
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