View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_high_9 (Length: 365)

Name: NF10481A_high_9
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_high_9
NF10481A_high_9
[»] chr1 (1 HSPs)
chr1 (12-365)||(38287139-38287493)


Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 12 - 365
Target Start/End: Complemental strand, 38287493 - 38287139
Alignment:
Q  12 atgaatgtgtgtgtatttgtgtgtctatatatgtattaaggaaaatggaaaagggtagagtagtaccactcctatacaatttggaaccagtacaaagtga 111  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38287493 atgaatgtgtgtttatttgtgtgtctatatacgtattaaggaaaatggaaaagggtagagtagtaccactcctatacaatttggaaccagtacaaagtga 38287394  T
Q  112 tatcatacgtacagacnnnnnnnn---ggaaagccaaatcccatatctaagcaataatcaaccgggttcacatatcactaattaattatagacatcatga 208  Q
    ||||||||| ||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38287393 tatcatacgcacagacaaaaaaaaaaaggaaagccaaatcccatatctaagcaataatcaaccgggttcacatatcactaattaatcatagacatcatga 38287294  T
Q  209 ttataaacttgctggattgtcatcaatgaa-gcaataaaaataactaataatcttactgttgattgagctttgtgatcgatgcatgagctaatttaaaga 307  Q
    |||||||||||||||||||||||||||||| ||| |||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38287293 ttataaacttgctggattgtcatcaatgaaagcagtaa---taactaataatcttactgttgattgagctttgtgatcgatgcatgagctaatttaaaga 38287197  T
Q  308 aaatttgtctttgtacacaaatacaccttattgactctttaagagagaaagaaataaa 365  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38287196 aaatttgtctttgtacacaaatataccttattgactctttaagagagaaagaaataaa 38287139  T

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