View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_10 (Length: 540)

Name: NF10481A_low_10
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_10
NF10481A_low_10
[»] chr5 (12 HSPs)
chr5 (12-538)||(39031577-39032102)
chr5 (108-175)||(39753318-39753385)
chr5 (103-175)||(21067619-21067691)
chr5 (110-176)||(19187150-19187216)
chr5 (103-176)||(36603696-36603769)
chr5 (104-172)||(38282501-38282569)
chr5 (128-175)||(14122929-14122976)
chr5 (100-172)||(28988394-28988468)
chr5 (108-172)||(1179956-1180020)
chr5 (108-175)||(24233184-24233251)
chr5 (103-172)||(36974077-36974146)
chr5 (108-176)||(5984823-5984891)
[»] scaffold0272 (1 HSPs)
scaffold0272 (78-176)||(6085-6183)
[»] chr8 (4 HSPs)
chr8 (86-175)||(40995823-40995912)
chr8 (104-172)||(7222851-7222917)
chr8 (138-178)||(6108601-6108641)
chr8 (113-178)||(12000140-12000205)
[»] chr4 (7 HSPs)
chr4 (84-172)||(27756454-27756542)
chr4 (100-175)||(19328821-19328896)
chr4 (114-172)||(3427880-3427938)
chr4 (114-178)||(25474651-25474715)
chr4 (130-172)||(2652941-2652983)
chr4 (104-172)||(20032920-20032989)
chr4 (100-172)||(3913652-3913724)
[»] chr3 (5 HSPs)
chr3 (108-175)||(1294908-1294975)
chr3 (78-175)||(8936082-8936179)
chr3 (114-175)||(42388754-42388815)
chr3 (104-175)||(43178606-43178677)
chr3 (104-172)||(28957720-28957788)
[»] chr1 (6 HSPs)
chr1 (78-176)||(19940599-19940697)
chr1 (78-175)||(32022616-32022713)
chr1 (110-176)||(1408629-1408695)
chr1 (86-176)||(46289802-46289892)
chr1 (111-172)||(32503012-32503073)
chr1 (127-175)||(34663137-34663185)
[»] chr2 (4 HSPs)
chr2 (108-176)||(9521065-9521133)
chr2 (78-168)||(27322727-27322817)
chr2 (102-175)||(16634421-16634494)
chr2 (100-175)||(9116405-9116480)
[»] chr7 (4 HSPs)
chr7 (78-175)||(30486952-30487049)
chr7 (84-176)||(28710391-28710483)
chr7 (108-172)||(15972139-15972203)
chr7 (108-175)||(47903888-47903953)
[»] chr6 (1 HSPs)
chr6 (119-171)||(6253518-6253570)


Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 12 - 538
Target Start/End: Original strand, 39031577 - 39032102
Alignment:
Q  12 tgttcaaaccctatccctgcatatatatgaaatgcccctatcaattattggataatgttaaccgcaggcaccggttaaagaattaaacgtggtaaatatt 111  Q
    ||||| ||||| |||||||||||||||||||||| ||| |||||||||||  ||||||||||||| | ||| | |||| || ||||| ||||||||||||    
T  39031577 tgttcgaaccccatccctgcatatatatgaaatgtcccgatcaattattgagtaatgttaaccgcggacactgattaaggagttaaatgtggtaaatatt 39031676  T
Q  112 acattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaactttatcnnnnnnnnnnnnnnaaccggtgtccatgaccc 211  Q
    ||||| |||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||| ||              |||| | | |||||||||    
T  39031677 acattaaaatttatgctgtcaattattcaaaa-cataaaaaatattactttcattttaaaactttctctttttagtttttttaaccagggcccatgaccc 39031775  T
Q  212 ttctttaattaagctcaggggaacgtagtatttaaccgtgcttaaagcattatgtaaaagaagnnnnnnngaagtcttaaattagtaatatttatgttgg 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  39031776 ttctttaattaagctcaggggaacgtagtatttaaccgtgcttaaagcattatgtaaaagaagaaaaaaagaagtcttaaattagtaatatttatgttgg 39031875  T
Q  312 ccttgtttgcaaatattgttccactgacacacaaaagcaccatcttttcttcttcataaataaacggacattcattcattagagctgctgcatctgcatg 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39031876 ccttgtttgcaaatattgttccactgacacacaaaagcaccatcttttcttcttcataaataaacggacattcattcattagagctgctgcatctgcatg 39031975  T
Q  412 tatagttcggttgctgtcctctcaggatggcttctgcatctttctgatcactttctcatcggattttggcattgcccatcagttaatcatatgtggatct 511  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39031976 tatagttcggttgctgtcctctctgggtggcttctgcatctttctgatcactttctcatcggattttggcattgcccatcagttaatcatatgtggatct 39032075  T
Q  512 gaattctgataccaatgtctccatttt 538  Q
    |||||||||||||||||||||||||||    
T  39032076 gaattctgataccaatgtctccatttt 39032102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 39753385 - 39753318
Alignment:
Q  108 tattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaactt 175  Q
    ||||||||||||| || ||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  39753385 tattacattgaaacttgtgctgtcaactcttcaaaagcataaaaagtattactttcattttaaaactt 39753318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 21067619 - 21067691
Alignment:
Q  103 gtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaactt 175  Q
    |||| ||||||||||||| || || ||||| || ||||||| ||||||||||| |||||||||||||||||||    
T  21067619 gtaagtattacattgaaacttgtgttgtcatctcttcaaaagcataaaaagtagtactttcattttaaaactt 21067691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 110 - 176
Target Start/End: Original strand, 19187150 - 19187216
Alignment:
Q  110 ttacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaacttt 176  Q
    |||||||||||||| || |||||||| ||||||| |||||||||| ||  |||||||||||||||||    
T  19187150 ttacattgaaatttgtgttgtcaactcttcaaaagcataaaaagtgttgttttcattttaaaacttt 19187216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 36603769 - 36603696
Alignment:
Q  103 gtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaacttt 176  Q
    |||| |||| ||||| || || || |||||||| |||||||||||||||||| | |||||||||||||||||||    
T  36603769 gtaagtattgcattggaacttgtgttgtcaactcttcaaaaacataaaaagtgtcactttcattttaaaacttt 36603696  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 38282501 - 38282569
Alignment:
Q  104 taaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaa 172  Q
    ||||||||||||| |||||| || |||||||| || ||||| ||||||||| ||| |||||||||||||    
T  38282501 taaatattacattaaaatttgtgttgtcaactctttaaaaatataaaaagtgttattttcattttaaaa 38282569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 128 - 175
Target Start/End: Original strand, 14122929 - 14122976
Alignment:
Q  128 tgtcaactattcaaaaacataaaaagtattactttcattttaaaactt 175  Q
    |||||||||||||||| |||| ||||| ||||||||||||||||||||    
T  14122929 tgtcaactattcaaaagcatataaagtgttactttcattttaaaactt 14122976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 28988468 - 28988394
Alignment:
Q  100 gtggtaaatattacattgaaatttatgctgtcaactattcaaaaacat--aaaaagtattactttcattttaaaa 172  Q
    ||||||| |||||||||||||||| ||  ||||||| ||||||| |||  ||||||| |||||||||||||||||    
T  28988468 gtggtaattattacattgaaatttgtgtcgtcaacttttcaaaagcataaaaaaagtgttactttcattttaaaa 28988394  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 1179956 - 1180020
Alignment:
Q  108 tattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaa 172  Q
    ||||||||||||| ||||| ||||||||  | ||||||||||||||| ||| ||| |||||||||    
T  1179956 tattacattgaaacttatgttgtcaacttctaaaaaacataaaaagtgttatttttattttaaaa 1180020  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 24233184 - 24233251
Alignment:
Q  108 tattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaactt 175  Q
    |||| ||||| || || ||||||||||| |||||||| ||||||||| |||||||||| || ||||||    
T  24233184 tattgcattggaacttgtgctgtcaacttttcaaaaatataaaaagtgttactttcatcttcaaactt 24233251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 36974146 - 36974077
Alignment:
Q  103 gtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaa 172  Q
    ||||||||| ||||  || || || |||||||| ||||||||||||||| || ||| |||||||||||||    
T  36974146 gtaaatattgcattagaacttgtgttgtcaactcttcaaaaacataaaatgtgttattttcattttaaaa 36974077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 5984891 - 5984823
Alignment:
Q  108 tattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaacttt 176  Q
    ||||||||||||| || ||| ||||||| ||||||||  || ||| ||||| ||||| |||||||||||    
T  5984891 tattacattgaaaattgtgcagtcaacttttcaaaaatttagaaaatattattttcaatttaaaacttt 5984823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 78 - 176
Target Start/End: Original strand, 6085 - 6183
Alignment:
Q  78 ggcaccggttaaagaattaaacgtggtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaacttt 176  Q
    ||||| |||||| || | ||| || |||| |||| ||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  6085 ggcactggttaaggagtcaaatgtagtaagtattgcattggaatttatgctgtcaacttttcaaaaacataaaaagtgttactttcattttaaaacttt 6183  T

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Target: chr8 (Bit Score: 54; Significance: 9e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 86 - 175
Target Start/End: Complemental strand, 40995912 - 40995823
Alignment:
Q  86 ttaaagaattaaacgtggtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaactt 175  Q
    ||||||||| ||| || |||| |||||||||||||||| || |||||||| |||||||||||||||||| ||| ||||||||||||||||    
T  40995912 ttaaagaatcaaatgtagtaagtattacattgaaatttgtgttgtcaactcttcaaaaacataaaaagtgttattttcattttaaaactt 40995823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 7222917 - 7222851
Alignment:
Q  104 taaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaa 172  Q
    |||||||||||||||||||| ||||||  |||||||||||||||||||||| ||||||| |||||||||    
T  7222917 taaatattacattgaaatttgtgctgt--actattcaaaaacataaaaagtgttacttttattttaaaa 7222851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 6108601 - 6108641
Alignment:
Q  138 tcaaaaacataaaaagtattactttcattttaaaactttat 178  Q
    ||||||||||||||||||||| ||||||||||||| |||||    
T  6108601 tcaaaaacataaaaagtattattttcattttaaaattttat 6108641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 12000205 - 12000140
Alignment:
Q  113 cattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaactttat 178  Q
    ||||| ||||| ||||||||||   |||||| |||||||| ||||| ||||| |||||||||||||    
T  12000205 cattggaatttgtgctgtcaacatctcaaaagcataaaaaatattattttcactttaaaactttat 12000140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 84 - 172
Target Start/End: Original strand, 27756454 - 27756542
Alignment:
Q  84 ggttaaagaattaaacgtggtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaa 172  Q
    |||||| |||| ||| || |||| |||||||||||||||| || |||||||| ||||||| |||||||||| ||| |||||||||||||    
T  27756454 ggttaaggaatcaaatgtagtaagtattacattgaaatttgtgttgtcaactcttcaaaagcataaaaagtgttattttcattttaaaa 27756542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 175
Target Start/End: Original strand, 19328821 - 19328896
Alignment:
Q  100 gtggtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaactt 175  Q
    ||||||| |||||||||| || || |||| |||||| |||||||  ||||||||| ||||||||||||||||||||    
T  19328821 gtggtaagtattacattggaacttgtgctatcaactcttcaaaagtataaaaagtgttactttcattttaaaactt 19328896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 3427880 - 3427938
Alignment:
Q  114 attgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaa 172  Q
    ||||||| || || |||||||| |||||||||||||||||| ||| |||||||||||||    
T  3427880 attgaaacttgtgttgtcaactcttcaaaaacataaaaagtgttattttcattttaaaa 3427938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 25474715 - 25474651
Alignment:
Q  114 attgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaactttat 178  Q
    |||||||||| || |||||||| ||||||| |||||||| | ||| ||||||||||||| |||||    
T  25474715 attgaaatttgtgttgtcaactcttcaaaagcataaaaaatgttattttcattttaaaattttat 25474651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 2652983 - 2652941
Alignment:
Q  130 tcaactattcaaaaacataaaaagtattactttcattttaaaa 172  Q
    |||||| |||||||||||||||||||| | |||||||||||||    
T  2652983 tcaactcttcaaaaacataaaaagtatcattttcattttaaaa 2652941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 20032920 - 20032989
Alignment:
Q  104 taaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattact-ttcattttaaaa 172  Q
    |||||||||||||| || || |  |||||||| |||||||||||||||||| ||| | ||||||||||||    
T  20032920 taaatattacattggaacttgtattgtcaactcttcaaaaacataaaaagtgttattcttcattttaaaa 20032989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 3913652 - 3913724
Alignment:
Q  100 gtggtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaa 172  Q
    ||||||| |||||| ||| || || || ||| |||| |||||||  ||||||||| |||||||||||||||||    
T  3913652 gtggtaagtattacgttggaacttgtgttgttaactcttcaaaagtataaaaagtgttactttcattttaaaa 3913724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 1294975 - 1294908
Alignment:
Q  108 tattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaactt 175  Q
    |||||||||||||||| |||||||| || |||| ||||||||||| | ||||||||||||||||||||    
T  1294975 tattacattgaaatttgtgctgtcagctcttcataaacataaaaaatgttactttcattttaaaactt 1294908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 78 - 175
Target Start/End: Complemental strand, 8936179 - 8936082
Alignment:
Q  78 ggcaccggttaaagaattaaacgtggtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaactt 175  Q
    ||||| |||||| || ||||| |||| || ||||||||||||| || ||||||||||  || |||| |||||||||| ||||||| ||||||||||||    
T  8936179 ggcactggttaaggagttaaatgtggcaagtattacattgaaacttgtgctgtcaacccttgaaaagcataaaaagtgttacttttattttaaaactt 8936082  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 175
Target Start/End: Original strand, 42388754 - 42388815
Alignment:
Q  114 attgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaactt 175  Q
    |||| ||||| ||||||||||| |||||||||||||||||| ||| |||||| |||||||||    
T  42388754 attggaatttgtgctgtcaacttttcaaaaacataaaaagtgttattttcatcttaaaactt 42388815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 104 - 175
Target Start/End: Original strand, 43178606 - 43178677
Alignment:
Q  104 taaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaactt 175  Q
    |||||||||||||||||||| | ||||||||| || ||||  ||||||| | ||||||| ||||||||||||    
T  43178606 taaatattacattgaaatttgtactgtcaacttttgaaaagtataaaaaatgttacttttattttaaaactt 43178677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 28957788 - 28957720
Alignment:
Q  104 taaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaa 172  Q
    ||||||||||||| ||||| ||  |||||||| ||| |||| ||||||||| ||| ||| |||||||||    
T  28957788 taaatattacattaaaattcatattgtcaactcttcgaaaatataaaaagtgttatttttattttaaaa 28957720  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 78 - 176
Target Start/End: Complemental strand, 19940697 - 19940599
Alignment:
Q  78 ggcaccggttaaagaattaaacgtggtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaacttt 176  Q
    ||||| |||||| |||| ||| || |||| |||| |||||||| ||||||||||||||  |||||| |||||||||| ||| ||||| |||||||||||    
T  19940697 ggcactggttaaggaatcaaatgtagtaagtattgcattgaaacttatgctgtcaactcctcaaaagcataaaaagtgttattttcactttaaaacttt 19940599  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 78 - 175
Target Start/End: Complemental strand, 32022713 - 32022616
Alignment:
Q  78 ggcaccggttaaagaattaaacgtggtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaactt 175  Q
    ||||| |||||| || | ||| ||||||| ||||||||||||| || | ||||||||| || ||||  ||||||||||||||||| ||||||||||||    
T  32022713 ggcactggttaaggagtcaaatgtggtaagtattacattgaaaattgtactgtcaactttttaaaagtataaaaagtattacttttattttaaaactt 32022616  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 110 - 176
Target Start/End: Original strand, 1408629 - 1408695
Alignment:
Q  110 ttacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaacttt 176  Q
    |||||||| || || || |||||||| |||||||||||||||||| ||| |||||||||||||||||    
T  1408629 ttacattggaacttgtgttgtcaactcttcaaaaacataaaaagttttattttcattttaaaacttt 1408695  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 176
Target Start/End: Complemental strand, 46289892 - 46289802
Alignment:
Q  86 ttaaagaattaaacgtggtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaacttt 176  Q
    ||||||||| ||  || |||| |||| ||||| || || ||||||||||  |||||||||||||||||| ||| ||||| |||||||||||    
T  46289892 ttaaagaatcaagtgtagtaagtattgcattgtaacttttgctgtcaacacttcaaaaacataaaaagtgttattttcactttaaaacttt 46289802  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 32503012 - 32503073
Alignment:
Q  111 tacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaa 172  Q
    ||||||| ||||| ||||||||| | || ||||| ||||||||||||||||| |||||||||    
T  32503012 tacattggaatttgtgctgtcaatttttaaaaaatataaaaagtattacttttattttaaaa 32503073  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 34663137 - 34663185
Alignment:
Q  127 ctgtcaactattcaaaaacataaaaagtattactttcattttaaaactt 175  Q
    ||||||||| |||||||  ||||||||| ||||||||||||||||||||    
T  34663137 ctgtcaacttttcaaaagtataaaaagtgttactttcattttaaaactt 34663185  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 9521133 - 9521065
Alignment:
Q  108 tattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaacttt 176  Q
    ||||||||||||| || ||||||||||| || ||||  ||||||||| ||||||| |||||||||||||    
T  9521133 tattacattgaaacttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaacttt 9521065  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 168
Target Start/End: Original strand, 27322727 - 27322817
Alignment:
Q  78 ggcaccggttaaagaattaaacgtggtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcatttt 168  Q
    ||||| |||||| || | ||| ||||||| |||| ||||| || || ||||||||||| || |||| |||||||||||||||||| |||||    
T  27322727 ggcactggttaaggagtcaaatgtggtaagtattgcattggaacttgtgctgtcaactcttgaaaagcataaaaagtattacttttatttt 27322817  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 16634421 - 16634494
Alignment:
Q  102 ggtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaactt 175  Q
    ||||| |||||||||| ||||| ||||||||||| ||||||| |||||||| | || |||  ||||||||||||    
T  16634421 ggtaagtattacattggaatttgtgctgtcaacttttcaaaagcataaaaaatgttgcttctattttaaaactt 16634494  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 9116480 - 9116405
Alignment:
Q  100 gtggtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaactt 175  Q
    |||||||||||| ||||| || || ||||||||||| || ||||  ||| ||||| ||||||| ||||||||||||    
T  9116480 gtggtaaatattgcattggaacttgtgctgtcaacttttgaaaagtatacaaagtgttacttttattttaaaactt 9116405  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 78 - 175
Target Start/End: Complemental strand, 30487049 - 30486952
Alignment:
Q  78 ggcaccggttaaagaattaaacgtggtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaactt 175  Q
    ||||| |||||| || | ||| || |||| |||| ||||||||||| ||| ||||||| || ||||| ||||||| | ||||||| ||||||||||||    
T  30487049 ggcactggttaaggagtcaaatgtcgtaagtattgcattgaaatttgtgccgtcaacttttaaaaaatataaaaaatgttacttttattttaaaactt 30486952  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 176
Target Start/End: Complemental strand, 28710483 - 28710391
Alignment:
Q  84 ggttaaagaattaaacgtggtaaatattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaacttt 176  Q
    |||||| |||| ||| || |||| |||||||||| ||||| |||||  ||||  ||||||||||||||| | ||| ||||| |||||||||||    
T  28710483 ggttaaggaatcaaatgtagtaagtattacattggaatttgtgctgctaactcctcaaaaacataaaaattgttattttcactttaaaacttt 28710391  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 15972203 - 15972139
Alignment:
Q  108 tattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaa 172  Q
    ||||||||||||| || || |||||| |  ||||||| ||||||||||||| ||||| |||||||    
T  15972203 tattacattgaaacttgtgttgtcaaatcctcaaaaatataaaaagtattattttcactttaaaa 15972139  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 47903953 - 47903888
Alignment:
Q  108 tattacattgaaatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaaactt 175  Q
    |||||||||| ||||| || ||||||||  ||||||||||  ||||| ||| ||||||||||||||||    
T  47903953 tattacattggaatttgtgttgtcaactcctcaaaaacat--aaagtgttattttcattttaaaactt 47903888  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 6253518 - 6253570
Alignment:
Q  119 aatttatgctgtcaactattcaaaaacataaaaagtattactttcattttaaa 171  Q
    ||||| |||||||||||| ||||||  ||||||||||||| ||||| ||||||    
T  6253518 aatttgtgctgtcaactactcaaaagaataaaaagtattattttcactttaaa 6253570  T

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