View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_100 (Length: 368)
Name: NF10481A_low_100
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_100 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 5 - 368
Target Start/End: Original strand, 41620442 - 41620805
Alignment:
| Q |
5 |
cggttaaccttgttggcgaatttgactcttcttacttagaactacaaactcctttagtagagcaaaactactatggtgtggcacaacctgatccagtggt |
104 |
Q |
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| T |
41620442 |
cggttaaccttgttggcgaatttgactcttcttacttagaactacaaactcctttagtagagcaaaactactatggtgtggcacaacctgatccagtggt |
41620541 |
T |
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| Q |
105 |
cattgagcaacaagctgctaaccattttcagaatggaacttggagttggaatgaaattcagccagtgatggttgaagaggtttcagcttcattagtacca |
204 |
Q |
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| T |
41620542 |
caatgagcaacaagctgctaaccattttcagaatggaacttggagttggaatgaaattcagccagtgatggttgaagaggtttcagcttcattagtacca |
41620641 |
T |
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| Q |
205 |
agagaaaagagaagtcatgcgatggatgataacgatgatactagtaatgaacaagagggaagaggtagcaagatttcagcaatcttttctgatgaattag |
304 |
Q |
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| T |
41620642 |
agagaaaagagaagtcatgcgatggatgataacgatgatactagtaatgaacaagagggaagaggtagcaagatttcagctatcttttctgatgaattag |
41620741 |
T |
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| Q |
305 |
aaccaccagagatcttagatgaggtacttctttgtcagcaaggaaggacactaactcaacacca |
368 |
Q |
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| T |
41620742 |
aaccaccagagatcttagatgaggtacttctttgtcagcaaggaaggacactaactcaacacca |
41620805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 21 - 368
Target Start/End: Original strand, 41623807 - 41624151
Alignment:
| Q |
21 |
cgaatttgactcttcttacttagaactacaaactcctttagtagagcaaaactactatggtgtggcacaacctgatccagtggtcattgagcaacaagct |
120 |
Q |
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| T |
41623807 |
cgaattcgactcttcttccatacaactacaaactcctttaatagaaaaaaactacgatgacttgacagaagctgatccagttgtcattgagacacgaggt |
41623906 |
T |
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| Q |
121 |
gctaaccattttcagaatggaacttggagttggaatgaaattcagccagtgatggttgaagaggtttcagcttcattagtaccaagagaaaagagaagtc |
220 |
Q |
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| T |
41623907 |
gataaacatttttgcaacggaacttggagttggaatgacattcagccagtgacggtgaaagaagtttcaccttcaacagtacca---gaaaaaagaagtc |
41624003 |
T |
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| Q |
221 |
atgcgatggatgataacgatgatactagtaatgaacaagagggaagaggtagcaagatttcagcaatcttttctgatgaattagaaccaccagagatctt |
320 |
Q |
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| T |
41624004 |
ataagatggataatgataatggtacttgtaatgaacaagaaggaagagctagcaaggtttcagctattttctctgatgaattagagccaccagagatttt |
41624103 |
T |
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| Q |
321 |
agatgaggtacttctttgtcagcaaggaaggacactaactcaacacca |
368 |
Q |
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| T |
41624104 |
agatgaggtactgctttatcagacaggaaagactctcactcaacacca |
41624151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 44 - 368
Target Start/End: Original strand, 41626791 - 41627112
Alignment:
| Q |
44 |
aactacaaactcctttagtagagcaaaactactatggtgtggcacaacctgatccagtggtcattgagcaacaagctgctaaccattttcagaatggaac |
143 |
Q |
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| T |
41626791 |
aactaaaaagtcctttaatagaaaaaaactactatgacttgacagaagctgatccagttgtcatcgagacacaaggtgctaaccattttcacaacggaac |
41626890 |
T |
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| Q |
144 |
ttggagttggaatgaaattcagccagtgatggttgaagaggtttcagcttcattagtaccaagagaaaagagaagtcatgcgatggatgataacgatgat |
243 |
Q |
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| T |
41626891 |
ttggagttggaatgacattcaaccagtgacgttggaagaagttttaccttcaacagtacca---gaaaaaagaagtcgtaagatggatagagataatgat |
41626987 |
T |
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| Q |
244 |
actagtaatgaacaagagggaagaggtagcaagatttcagcaatcttttctgatgaattagaaccaccagagatcttagatgaggtacttctttgtcagc |
343 |
Q |
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| T |
41626988 |
acttgtaatgaacaagagggaagaggtagcaaggtttcagctattctctctgatgaattagagccaccagagattttagatgaggtactgctttatcaga |
41627087 |
T |
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| Q |
344 |
aaggaaggacactaactcaacacca |
368 |
Q |
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| T |
41627088 |
aaggaaagactctcactcaatacca |
41627112 |
T |
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