View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_109 (Length: 362)

Name: NF10481A_low_109
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_109
NF10481A_low_109
[»] chr3 (24 HSPs)
chr3 (77-234)||(8578714-8578860)
chr3 (296-354)||(5938737-5938795)
chr3 (298-354)||(19441069-19441125)
chr3 (297-352)||(45227277-45227332)
chr3 (296-354)||(19480035-19480093)
chr3 (302-354)||(18111591-18111643)
chr3 (296-354)||(5938804-5938862)
chr3 (296-354)||(5938871-5938929)
chr3 (312-354)||(5939005-5939047)
chr3 (296-354)||(18111524-18111582)
chr3 (296-354)||(19384282-19384340)
chr3 (296-354)||(28034676-28034734)
chr3 (312-354)||(28034743-28034785)
chr3 (311-354)||(29897183-29897226)
chr3 (312-354)||(5835635-5835677)
chr3 (296-354)||(5938938-5938996)
chr3 (189-297)||(8553460-8553561)
chr3 (259-297)||(8584154-8584192)
chr3 (296-354)||(18111457-18111515)
chr3 (296-354)||(19384220-19384278)
chr3 (312-354)||(19441136-19441178)
chr3 (312-354)||(28034809-28034851)
chr3 (44-77)||(8578423-8578456)
chr3 (314-354)||(29897128-29897168)
[»] chr7 (19 HSPs)
chr7 (305-354)||(3078497-3078546)
chr7 (296-354)||(3078555-3078613)
chr7 (296-354)||(3081346-3081403)
chr7 (296-354)||(15695427-15695485)
chr7 (296-354)||(15702407-15702465)
chr7 (296-362)||(21958470-21958536)
chr7 (296-354)||(21958537-21958595)
chr7 (296-353)||(34456446-34456503)
chr7 (296-354)||(4341295-4341353)
chr7 (311-354)||(3078650-3078693)
chr7 (311-354)||(42785902-42785945)
chr7 (296-354)||(42785954-42786011)
chr7 (296-354)||(48478289-48478346)
chr7 (311-353)||(48478356-48478398)
chr7 (313-354)||(4341229-4341270)
chr7 (313-354)||(48477961-48478002)
chr7 (313-354)||(48478027-48478068)
chr7 (313-354)||(48478093-48478134)
chr7 (313-354)||(48478223-48478264)
[»] scaffold0046 (1 HSPs)
scaffold0046 (296-354)||(90494-90552)
[»] chr8 (11 HSPs)
chr8 (296-346)||(3165849-3165899)
chr8 (296-354)||(25336616-25336674)
chr8 (296-351)||(25336552-25336607)
chr8 (296-354)||(3165916-3165973)
chr8 (296-354)||(5557902-5557959)
chr8 (296-354)||(3165982-3166040)
chr8 (296-354)||(5557836-5557893)
chr8 (296-354)||(20810385-20810443)
chr8 (297-346)||(3165783-3165832)
chr8 (313-354)||(5557770-5557811)
chr8 (320-360)||(20810342-20810382)
[»] chr6 (16 HSPs)
chr6 (296-354)||(5249991-5250049)
chr6 (296-354)||(28145162-28145220)
chr6 (297-354)||(26620431-26620488)
chr6 (297-354)||(26726410-26726467)
chr6 (296-353)||(28145230-28145287)
chr6 (312-354)||(6406611-6406653)
chr6 (296-354)||(28145095-28145153)
chr6 (312-354)||(31113150-31113192)
chr6 (313-354)||(34255591-34255632)
chr6 (311-354)||(5249939-5249982)
chr6 (311-354)||(28145296-28145339)
chr6 (311-357)||(33296078-33296124)
chr6 (313-354)||(29934616-29934657)
chr6 (313-354)||(34255525-34255566)
chr6 (313-354)||(34255657-34255698)
chr6 (296-359)||(31113201-31113265)
[»] chr4 (28 HSPs)
chr4 (299-354)||(31663564-31663619)
chr4 (296-354)||(5578236-5578294)
chr4 (296-357)||(6735363-6735425)
chr4 (311-354)||(4852583-4852626)
chr4 (311-354)||(4852652-4852695)
chr4 (312-354)||(13713188-13713230)
chr4 (312-362)||(31663376-31663426)
chr4 (296-354)||(31663427-31663485)
chr4 (296-353)||(1505993-1506050)
chr4 (313-362)||(1506184-1506233)
chr4 (296-354)||(1506125-1506183)
chr4 (296-354)||(5599930-5599987)
chr4 (311-353)||(5599997-5600039)
chr4 (312-354)||(13713121-13713163)
chr4 (312-354)||(13713321-13713363)
chr4 (296-354)||(14190500-14190557)
chr4 (312-354)||(31663308-31663350)
chr4 (313-354)||(1506059-1506100)
chr4 (305-346)||(5578441-5578482)
chr4 (313-354)||(5599798-5599839)
chr4 (313-354)||(5599864-5599905)
chr4 (313-354)||(5909075-5909116)
chr4 (317-354)||(5909141-5909178)
chr4 (296-341)||(6735431-6735476)
chr4 (313-354)||(13702628-13702669)
chr4 (313-354)||(13713255-13713296)
chr4 (311-359)||(13713383-13713431)
chr4 (302-354)||(31663229-31663281)
[»] scaffold0927 (2 HSPs)
scaffold0927 (296-354)||(3576-3634)
scaffold0927 (296-354)||(3643-3701)
[»] scaffold0043 (2 HSPs)
scaffold0043 (296-354)||(69747-69805)
scaffold0043 (296-353)||(69814-69871)
[»] chr2 (12 HSPs)
chr2 (296-354)||(31346814-31346872)
chr2 (296-354)||(31314998-31315056)
chr2 (312-354)||(31315065-31315107)
chr2 (312-354)||(31315135-31315177)
chr2 (297-351)||(31346934-31346988)
chr2 (296-362)||(31347000-31347066)
chr2 (296-354)||(31347067-31347125)
chr2 (305-362)||(31315195-31315252)
chr2 (313-354)||(2743383-2743424)
chr2 (313-354)||(2743449-2743490)
chr2 (313-354)||(2743515-2743556)
chr2 (320-357)||(11951282-11951319)
[»] chr1 (9 HSPs)
chr1 (296-346)||(15088591-15088641)
chr1 (296-354)||(22207980-22208038)
chr1 (296-346)||(22211199-22211249)
chr1 (311-346)||(14114823-14114858)
chr1 (311-362)||(22207700-22207751)
chr1 (296-346)||(22207649-22207699)
chr1 (312-354)||(22207777-22207819)
chr1 (296-354)||(51844364-51844422)
chr1 (311-351)||(14114754-14114794)
[»] scaffold0060 (1 HSPs)
scaffold0060 (312-359)||(39927-39974)
[»] chr5 (5 HSPs)
chr5 (311-354)||(41528655-41528698)
chr5 (296-354)||(41528457-41528514)
chr5 (296-354)||(41528523-41528580)
chr5 (296-354)||(41528589-41528646)
chr5 (305-354)||(37368910-37368959)


Alignment Details
Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 77 - 234
Target Start/End: Original strand, 8578714 - 8578860
Alignment:
Q  77 ttagaggatccataaggaagtattatcttttagtttatgaatttatgcataagtgtcgtgtggactgtggagggttaactattcaagacttagtagaatc 176  Q
    |||||||||||||||| ||  ||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||| ||||||||||||               
T  8578714 ttagaggatccataagcaaaaattatcttttagtttatgaatttatgcatgagtgtcgtgtgaactgtggagagttgactattcaagac----------- 8578802  T
Q  177 ttataagttttaaatcttgaat---gcagcattattgtttttgaagttaccacaactacaa 234  Q
       ||||||||| |||||||||   ||||||||||||||||| ||||||||||||||||||    
T  8578803 ---taagttttatatcttgaatgcagcagcattattgtttttcaagttaccacaactacaa 8578860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 5938795 - 5938737
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||||| ||||||| ||||| ||||||||||||||||||||| |||||||    
T  5938795 catagtaacaaatgcgaaaactcagtttgctacaacgaagagataatgtagactatgag 5938737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 298 - 354
Target Start/End: Complemental strand, 19441125 - 19441069
Alignment:
Q  298 tagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||| ||||||| ||||| ||| |||||||||||||||||||||||||    
T  19441125 tagtaacaaatgcgaaaactccgtttgctacgacgaagagataatgtagtctatgag 19441069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 297 - 352
Target Start/End: Original strand, 45227277 - 45227332
Alignment:
Q  297 atagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatg 352  Q
    ||||||| ||||| |||||||||||||| ||||||||||||||||||||| |||||    
T  45227277 atagtaagaaatgtaaaaactctgtttgctacaacgaagagataatgtagcctatg 45227332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 19480035 - 19480093
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||||||||||||||||||| |||||  ||||| ||||||||||||||| |||||||    
T  19480035 catagtaacaaatgcaaaaactttgtttcctacaatgaagagataatgtagcctatgag 19480093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 302 - 354
Target Start/End: Complemental strand, 18111643 - 18111591
Alignment:
Q  302 aacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||| ||||||| ||||| ||||||||||||||||||||| |||||||    
T  18111643 aacaaatgcgaaaactccgtttgctacaacgaagagataatgtagcctatgag 18111591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 5938862 - 5938804
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||||  ||||||| ||||| ||||||||||||||||| ||| |||||||    
T  5938862 catagtaacaaatgtgaaaactccgtttgctacaacgaagagataatatagcctatgag 5938804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 5938929 - 5938871
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||||  ||||||| ||||| |||||||||||||| |||||| |||||||    
T  5938929 catagtaacaaatgtgaaaactccgtttgctacaacgaagagatgatgtagcctatgag 5938871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 5939047 - 5939005
Alignment:
Q  312 aaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||| ||||| |||||||||||||||||||||||||||||    
T  5939047 aaaactccgtttgctacaacgaagagataatgtagtctatgag 5939005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 18111582 - 18111524
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||||| |||||  ||||||| ||||| ||||||||||||||||||||| |||||||    
T  18111582 catagtaaaaaatgtgaaaactccgtttgctacaacgaagagataatgtagcctatgag 18111524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 19384340 - 19384282
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||| ||||| ||||||| ||||| ||| ||||||||||||||||| |||||||    
T  19384340 catagtaacgaatgcgaaaactccgtttgctacgacgaagagataatgtagcctatgag 19384282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 28034734 - 28034676
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||| | |||||| |||||| ||||||||||| ||||||||| |||||||    
T  28034734 catagtaacaaatccgaaaactttgtttgctacaacgaagaaataatgtagcctatgag 28034676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 28034785 - 28034743
Alignment:
Q  312 aaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||| ||||||||||||||||||||| |||||||    
T  28034785 aaaactctgtttgctacaacgaagagataatgtagcctatgag 28034743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 311 - 354
Target Start/End: Complemental strand, 29897226 - 29897183
Alignment:
Q  311 aaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||||||||||| ||||||||||||||||| |||| ||||||    
T  29897226 aaaaactctgtttgctacaacgaagagataatatagtttatgag 29897183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 5835677 - 5835635
Alignment:
Q  312 aaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||| ||||| ||||||||||||||||||||| |||||||    
T  5835677 aaaactccgtttgctacaacgaagagataatgtagcctatgag 5835635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 5938996 - 5938938
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||||| |||||  |||| || ||||| ||||||||||||||||||||| |||||||    
T  5938996 catagtaataaatgtgaaaattccgtttgctacaacgaagagataatgtagcctatgag 5938938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 297
Target Start/End: Complemental strand, 8553561 - 8553460
Alignment:
Q  189 aatcttgaatgcagcattattgtttttgaagttaccacaactacaaaaactctgtgattgagcccatatcagccacattcaaggtgatactctgcagtat 288  Q
    |||||||||||  ||||||||| |||| |||||||||||||||||| |        |||||| |  ||||| |||||||  | |||||||||||||||||    
T  8553561 aatcttgaatgtggcattattggttttaaagttaccacaactacaaca-------cattgagtctgtatcaaccacatttgatgtgatactctgcagtat 8553469  T
Q  289 agtatcaca 297  Q
    |||||||||    
T  8553468 agtatcaca 8553460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 297
Target Start/End: Original strand, 8584154 - 8584192
Alignment:
Q  259 agccacattcaaggtgatactctgcagtatagtatcaca 297  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  8584154 agccacattccatgtgatactctgcagtatagtatcaca 8584192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 18111515 - 18111457
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||| |||||||||  ||||| | ||||| ||||||||||||||||||||| |||||||    
T  18111515 cataataacaaatgtgaaaaccccgtttgctacaacgaagagataatgtagcctatgag 18111457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 19384278 - 19384220
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||| ||||| ||||||| ||||| ||| ||||||||||||||||  |||||||    
T  19384278 catagtaacgaatgcgaaaactccgtttgctacgacgaagagataatgtaacctatgag 19384220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 19441178 - 19441136
Alignment:
Q  312 aaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||| |||||| ||||||||||||||||||||| |||||||    
T  19441178 aaaactttgtttgctacaacgaagagataatgtagcctatgag 19441136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 28034851 - 28034809
Alignment:
Q  312 aaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||| ||||| ||||||||||||||||||||| |||||||    
T  28034851 aaaactccgtttgctacaacgaagagataatgtagcctatgag 28034809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 8578423 - 8578456
Alignment:
Q  44 gttgaactcgctcatcttggtgaaggacatccat 77  Q
    |||||||||||||||||||| |||||||||||||    
T  8578423 gttgaactcgctcatcttggggaaggacatccat 8578456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 354
Target Start/End: Complemental strand, 29897168 - 29897128
Alignment:
Q  314 aactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||| |||||| |||||||||||||| |||||||    
T  29897168 aactctgtttgctacaacaaagagataatgtagcctatgag 29897128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 305 - 354
Target Start/End: Original strand, 3078497 - 3078546
Alignment:
Q  305 aaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3078497 aaatgcaaaaactttgtttgttacaacgaagagataatgtagtctatgag 3078546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 3078555 - 3078613
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||| ||||||||||||| ||||| ||||||||| ||||||||||| |||||||    
T  3078555 catagtaacgaatgcaaaaactccgtttgctacaacgaatagataatgtagcctatgag 3078613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 3081403 - 3081346
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||||||||||||| ||||| ||||||||| ||||||||||| |||||||    
T  3081403 catagtaacaaatgcaaaaactccgtttgctacaacgaa-agataatgtagcctatgag 3081346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 15695427 - 15695485
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||||| ||||||| ||||| |||||| |||||||||||||| |||||||    
T  15695427 catagtaacaaatgcgaaaactccgtttgctacaactaagagataatgtagcctatgag 15695485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 15702407 - 15702465
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||||| ||||||| ||||| |||||| |||||||||||||| |||||||    
T  15702407 catagtaacaaatgcgaaaactccgtttgctacaactaagagataatgtagcctatgag 15702465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 362
Target Start/End: Original strand, 21958470 - 21958536
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgagatatggct 362  Q
    ||||||||||||||| || | || ||||| ||||||||||||||||||||| ||||||| |||||||    
T  21958470 catagtaacaaatgcgaagattccgtttgctacaacgaagagataatgtagcctatgaggtatggct 21958536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 21958537 - 21958595
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||||| ||||||| ||||| ||||||||||||||||| ||| |||||||    
T  21958537 catagtaacaaatgcgaaaactccgtttgctacaacgaagagataatatagcctatgag 21958595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 353
Target Start/End: Original strand, 34456446 - 34456503
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatga 353  Q
    |||||||| |||||  ||||||| ||||| ||||||||||||||||||||||||||||    
T  34456446 catagtaaaaaatgtgaaaactccgtttgctacaacgaagagataatgtagtctatga 34456503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 4341353 - 4341295
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||| ||||  ||||||| ||||| ||||||||||||||||||||| |||||||    
T  4341353 catagtaacgaatgtgaaaactccgtttgctacaacgaagagataatgtagcctatgag 4341295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 311 - 354
Target Start/End: Original strand, 3078650 - 3078693
Alignment:
Q  311 aaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||||||||||| |||||||| |||||||||||| |||||||    
T  3078650 aaaaactctgtttgctacaacgatgagataatgtagcctatgag 3078693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 311 - 354
Target Start/End: Original strand, 42785902 - 42785945
Alignment:
Q  311 aaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||||| ||||| ||||||||||||||||||||| |||||||    
T  42785902 aaaaactccgtttgctacaacgaagagataatgtagcctatgag 42785945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 42785954 - 42786011
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||||  ||| ||| ||||| ||||||||||||||||||||| |||||||    
T  42785954 catagtaacaaatgtgaaa-ctccgtttgctacaacgaagagataatgtagcctatgag 42786011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 48478346 - 48478289
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||||  ||| ||| ||||| ||||||||||||||||||||| |||||||    
T  48478346 catagtaacaaatgtgaaa-ctccgtttgctacaacgaagagataatgtagcctatgag 48478289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 353
Target Start/End: Complemental strand, 48478398 - 48478356
Alignment:
Q  311 aaaaactctgtttgttacaacgaagagataatgtagtctatga 353  Q
    |||||||| ||||| ||||||||||||||||||||| ||||||    
T  48478398 aaaaactccgtttgctacaacgaagagataatgtagcctatga 48478356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 4341270 - 4341229
Alignment:
Q  313 aaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  4341270 aaactccgtttgctacaacgaagagataatgtagcctatgag 4341229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 48478002 - 48477961
Alignment:
Q  313 aaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  48478002 aaactccgtttgctacaacgaagagataatgtagcctatgag 48477961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 48478068 - 48478027
Alignment:
Q  313 aaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  48478068 aaactccgtttgctacaacgaagagataatgtagcctatgag 48478027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 48478134 - 48478093
Alignment:
Q  313 aaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  48478134 aaactccgtttgctacaacgaagagataatgtagcctatgag 48478093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 48478264 - 48478223
Alignment:
Q  313 aaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  48478264 aaactccgtttgctacaacgaagagataatgtagcctatgag 48478223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 90552 - 90494
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||    
T  90552 catagtaacaaatgcgaaaactttgtttgctacaacgaagagataatgtagcctatgag 90494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 296 - 346
Target Start/End: Original strand, 3165849 - 3165899
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtag 346  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  3165849 catagtaacaagtgcaaaaactctgtttgctacaacgaagagataatgtag 3165899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 25336674 - 25336616
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||||  ||||||||||||| ||||||||||||||||||||| |||||||    
T  25336674 catagtaacaaatgtgaaaactctgtttgctacaacgaagagataatgtagcctatgag 25336616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 351
Target Start/End: Complemental strand, 25336607 - 25336552
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctat 351  Q
    ||||||||||||||  ||||||| ||||| ||||||||||||||||||||| ||||    
T  25336607 catagtaacaaatgtgaaaactccgtttgctacaacgaagagataatgtagcctat 25336552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 3165916 - 3165973
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||| ||||||||||||||||| ||| |||||||||||||| || |||||||    
T  3165916 catagtaacaattgcaaaaactctgtttgctac-acgaagagataatgcagcctatgag 3165973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 5557959 - 5557902
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||||  ||| ||||||||| ||||||||||||||||||||| |||||||    
T  5557959 catagtaacaaatgtgaaa-ctctgtttgctacaacgaagagataatgtagcctatgag 5557902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 3165982 - 3166040
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||| ||| |||| ||  |||| ||||||||||||||||||||| |||||||    
T  3165982 catagtaacaagtgcgaaaattccatttgctacaacgaagagataatgtagcctatgag 3166040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 5557893 - 5557836
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||||  ||| ||| ||||| ||||||||||||||||||||| |||||||    
T  5557893 catagtaacaaatgtgaaa-ctccgtttgctacaacgaagagataatgtagcctatgag 5557836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 20810385 - 20810443
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||| ||||  |||  |||||||| ||||||||||||||||||||| |||||||    
T  20810385 catagtaacgaatgtgaaatatctgtttgctacaacgaagagataatgtagcctatgag 20810443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 3165783 - 3165832
Alignment:
Q  297 atagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtag 346  Q
    |||||||||| ||  |||||| |||||| |||||||||||||||||||||    
T  3165783 atagtaacaagtgtgaaaactttgtttgctacaacgaagagataatgtag 3165832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 5557811 - 5557770
Alignment:
Q  313 aaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  5557811 aaactccgtttgctacaacgaagagataatgtagcctatgag 5557770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 20810342 - 20810382
Alignment:
Q  320 gtttgttacaacgaagagataatgtagtctatgagatatgg 360  Q
    ||||| ||||||||||||||||||||| ||||||| |||||    
T  20810342 gtttgctacaacgaagagataatgtagcctatgaggtatgg 20810382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 5249991 - 5250049
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||||| |||||||| |||| ||||||||||||||||||||| |||||||    
T  5249991 catagtaacaaatgcgaaaactctatttgctacaacgaagagataatgtagcctatgag 5250049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 28145220 - 28145162
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||||| || |||| ||||| ||||||||||||||||||||| |||||||    
T  28145220 catagtaacaaatgcgaagactccgtttgctacaacgaagagataatgtagcctatgag 28145162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 354
Target Start/End: Original strand, 26620431 - 26620488
Alignment:
Q  297 atagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||||| ||||| ||||||| ||||| ||||||||||||||||||||| |||||||    
T  26620431 atagtaacgaatgcgaaaactccgtttgctacaacgaagagataatgtagcctatgag 26620488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 354
Target Start/End: Original strand, 26726410 - 26726467
Alignment:
Q  297 atagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||||| ||||| ||||||| ||||| ||||||||||||||||||||| |||||||    
T  26726410 atagtaacgaatgcgaaaactccgtttgctacaacgaagagataatgtagcctatgag 26726467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 353
Target Start/End: Complemental strand, 28145287 - 28145230
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatga 353  Q
    ||||||||| ||||||||| ||| ||||| ||||||||||||||||||||| ||||||    
T  28145287 catagtaacgaatgcaaaatctccgtttgctacaacgaagagataatgtagcctatga 28145230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 6406653 - 6406611
Alignment:
Q  312 aaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||| ||||||||||||||||||||| |||||||    
T  6406653 aaaactctgtttgctacaacgaagagataatgtagcctatgag 6406611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 28145153 - 28145095
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||||  ||||||| ||||| |||||| |||||||||||||| |||||||    
T  28145153 catagtaacaaatgtgaaaactccgtttgctacaacaaagagataatgtagcctatgag 28145095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 354
Target Start/End: Original strand, 31113150 - 31113192
Alignment:
Q  312 aaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||| ||||||||||||||||||||| |||||||    
T  31113150 aaaactctgtttgctacaacgaagagataatgtagcctatgag 31113192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 34255591 - 34255632
Alignment:
Q  313 aaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||||||||| ||||||||||||||||||||| |||||||    
T  34255591 aaactctgtttgctacaacgaagagataatgtagcctatgag 34255632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 311 - 354
Target Start/End: Original strand, 5249939 - 5249982
Alignment:
Q  311 aaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||| |||||||| |||||||||||||||||||||| ||||||    
T  5249939 aaaaattctgtttgctacaacgaagagataatgtagtgtatgag 5249982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 311 - 354
Target Start/End: Complemental strand, 28145339 - 28145296
Alignment:
Q  311 aaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||| ||| ||||| |||||||||||||||||||||||||||||    
T  28145339 aaaatctccgtttgctacaacgaagagataatgtagtctatgag 28145296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 357
Target Start/End: Original strand, 33296078 - 33296124
Alignment:
Q  311 aaaaactctgtttgttacaacgaagagataatgtagtctatgagata 357  Q
    ||||| || ||||| ||||||||||||||||||||| ||||||||||    
T  33296078 aaaaaatcagtttgctacaacgaagagataatgtagcctatgagata 33296124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 29934616 - 29934657
Alignment:
Q  313 aaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  29934616 aaactccgtttgctacaacgaagagataatgtagcctatgag 29934657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 34255525 - 34255566
Alignment:
Q  313 aaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  34255525 aaactccgtttgctacaacgaagagataatgtagcctatgag 34255566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 34255657 - 34255698
Alignment:
Q  313 aaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  34255657 aaactccgtttgctacaacgaagagataatgtagcctatgag 34255698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 359
Target Start/End: Original strand, 31113201 - 31113265
Alignment:
Q  296 catagtaacaaatgcaaaaac-tctgtttgttacaacgaagagataatgtagtctatgagatatg 359  Q
    ||||||||||||||  ||||| ||| |||| |||||||||||||||||||||  |||||| ||||    
T  31113201 catagtaacaaatgtgaaaacctctatttgctacaacgaagagataatgtagcttatgaggtatg 31113265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 354
Target Start/End: Original strand, 31663564 - 31663619
Alignment:
Q  299 agtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||||||||  ||||||||||||| ||||||||||||||||||||| |||||||    
T  31663564 agtaacaaatgtgaaaactctgtttgctacaacgaagagataatgtagcctatgag 31663619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 5578236 - 5578294
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||| ||||| ||| ||||||||| ||||||||||||||||||||| |||||||    
T  5578236 catagtaacgaatgcgaaatctctgtttgctacaacgaagagataatgtagcctatgag 5578294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 357
Target Start/End: Original strand, 6735363 - 6735425
Alignment:
Q  296 catagtaacaaatgcaaaaa-ctctgtttgttacaacgaagagataatgtagtctatgagata 357  Q
    |||||||||||||| ||||| ||||||||| |||||||||||||||||||||  |||||||||    
T  6735363 catagtaacaaatgtaaaaatctctgtttgctacaacgaagagataatgtagcttatgagata 6735425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 311 - 354
Target Start/End: Complemental strand, 4852626 - 4852583
Alignment:
Q  311 aaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||||||||||| ||||||||||||||||||||| |||||||    
T  4852626 aaaaactctgtttgctacaacgaagagataatgtagcctatgag 4852583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 311 - 354
Target Start/End: Complemental strand, 4852695 - 4852652
Alignment:
Q  311 aaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||||||||||| ||||||||||||||||||||| |||||||    
T  4852695 aaaaactctgtttgctacaacgaagagataatgtagcctatgag 4852652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 13713230 - 13713188
Alignment:
Q  312 aaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||| ||||||||||||||||||||| |||||||    
T  13713230 aaaactctgtttgctacaacgaagagataatgtagcctatgag 13713188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 362
Target Start/End: Original strand, 31663376 - 31663426
Alignment:
Q  312 aaaactctgtttgttacaacgaagagataatgtagtctatgagatatggct 362  Q
    ||||||| ||||| ||||||||||||||||||||| |||||||||| ||||    
T  31663376 aaaactccgtttgctacaacgaagagataatgtagcctatgagatacggct 31663426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 31663427 - 31663485
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||||| |||||  ||||||| ||||| ||||||||||||||||||||| |||||||    
T  31663427 catagtaaaaaatgtgaaaactccgtttgctacaacgaagagataatgtagcctatgag 31663485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 353
Target Start/End: Complemental strand, 1506050 - 1505993
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatga 353  Q
    ||||||||| ||||  ||||||| ||||| ||||||||||||||||||||| ||||||    
T  1506050 catagtaacgaatgtgaaaactccgtttgctacaacgaagagataatgtagcctatga 1505993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 1506233 - 1506184
Alignment:
Q  313 aaactctgtttgttacaacgaagagataatgtagtctatgagatatggct 362  Q
    |||||| ||||| ||||||||||||||||||||| ||||||| |||||||    
T  1506233 aaactccgtttgctacaacgaagagataatgtagcctatgaggtatggct 1506184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 1506183 - 1506125
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||| ||||  ||||||| ||||| ||||||||||||||||| ||| |||||||    
T  1506183 catagtaacgaatgtgaaaactccgtttgctacaacgaagagataatatagcctatgag 1506125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 5599987 - 5599930
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||||  ||| ||| ||||| ||||||||||||||||||||| |||||||    
T  5599987 catagtaacaaatgtgaaa-ctccgtttgctacaacgaagagataatgtagcctatgag 5599930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 353
Target Start/End: Complemental strand, 5600039 - 5599997
Alignment:
Q  311 aaaaactctgtttgttacaacgaagagataatgtagtctatga 353  Q
    |||||||| ||||| ||||||||||||||||||||| ||||||    
T  5600039 aaaaactccgtttgctacaacgaagagataatgtagcctatga 5599997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 13713163 - 13713121
Alignment:
Q  312 aaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||| ||||| ||||||||||||||||||||| |||||||    
T  13713163 aaaactccgtttgctacaacgaagagataatgtagcctatgag 13713121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 13713363 - 13713321
Alignment:
Q  312 aaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||| ||||| ||||||||||||||||||||| |||||||    
T  13713363 aaaactccgtttgctacaacgaagagataatgtagcctatgag 13713321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 14190557 - 14190500
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||||  ||| ||| ||||| ||||||||||||||||||||| |||||||    
T  14190557 catagtaacaaatgtgaaa-ctccgtttgctacaacgaagagataatgtagcctatgag 14190500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 354
Target Start/End: Original strand, 31663308 - 31663350
Alignment:
Q  312 aaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||| ||||| ||||||||||||||||||||| |||||||    
T  31663308 aaaactccgtttgctacaacgaagagataatgtagcctatgag 31663350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 1506100 - 1506059
Alignment:
Q  313 aaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  1506100 aaactcagtttgctacaacgaagagataatgtagcctatgag 1506059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 5578441 - 5578482
Alignment:
Q  305 aaatgcaaaaactctgtttgttacaacgaagagataatgtag 346  Q
    |||||| ||||||| ||||| |||||||||||||||||||||    
T  5578441 aaatgcgaaaactccgtttgctacaacgaagagataatgtag 5578482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 5599839 - 5599798
Alignment:
Q  313 aaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  5599839 aaactccgtttgctacaacgaagagataatgtagcctatgag 5599798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 5599905 - 5599864
Alignment:
Q  313 aaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  5599905 aaactccgtttgctacaacgaagagataatgtagcctatgag 5599864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 5909116 - 5909075
Alignment:
Q  313 aaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  5909116 aaactccgtttgctacaacgaagagataatgtagcctatgag 5909075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 354
Target Start/End: Complemental strand, 5909178 - 5909141
Alignment:
Q  317 tctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  5909178 tctgtttgctacaacgaagagataatgtagcctatgag 5909141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 6735431 - 6735476
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataa 341  Q
    |||||||||||||||||||||  |||||  ||||||||||||||||    
T  6735431 catagtaacaaatgcaaaaacattgtttactacaacgaagagataa 6735476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 13702669 - 13702628
Alignment:
Q  313 aaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  13702669 aaactccgtttgctacaacgaagagataatgtagcctatgag 13702628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 13713296 - 13713255
Alignment:
Q  313 aaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||||||||| ||| ||||||||||||||||| |||||||    
T  13713296 aaactctgtttgctacgacgaagagataatgtagcctatgag 13713255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 359
Target Start/End: Complemental strand, 13713431 - 13713383
Alignment:
Q  311 aaaaactctgtttgttacaacgaagagataatgtagtctatgagatatg 359  Q
    |||||||| ||||| ||||||||||||||||||||  ||||||| ||||    
T  13713431 aaaaactccgtttgctacaacgaagagataatgtatcctatgaggtatg 13713383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 354
Target Start/End: Original strand, 31663229 - 31663281
Alignment:
Q  302 aacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||||||||||| || ||||| ||||| ||| ||||||||||| |||||||    
T  31663229 aacaaatgcaaaaaatccgtttgctacaatgaatagataatgtagcctatgag 31663281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0927
Description:

Target: scaffold0927; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 3634 - 3576
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||||  ||||||| |||| |||||||||||||||||||||| |||||||    
T  3634 catagtaacaaatgtgaaaactccgtttattacaacgaagagataatgtagcctatgag 3576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 3701 - 3643
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||||  |||||| |||||| ||||||||||||||||||||| |||||||    
T  3701 catagtaacaaatgtgaaaactttgtttgctacaacgaagagataatgtagcctatgag 3643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 69747 - 69805
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||||  |||| |||||||| ||||||||||||||||||||| |||||||    
T  69747 catagtaacaaatgacaaaaatctgtttgctacaacgaagagataatgtagcctatgag 69805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 353
Target Start/End: Original strand, 69814 - 69871
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatga 353  Q
    ||||||||||||||  ||||||| ||||| ||||||||||||||||| ||| ||||||    
T  69814 catagtaacaaatgtgaaaactccgtttgctacaacgaagagataatatagcctatga 69871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 31346814 - 31346872
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||||| |||||  ||||||||||||| ||||||||||||||||||||| |||||||    
T  31346814 catagtaaaaaatgtgaaaactctgtttgctacaacgaagagataatgtagcctatgag 31346872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 31315056 - 31314998
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||||| |||||  ||||||| ||||| ||||||||||||||||||||| |||||||    
T  31315056 catagtaaaaaatgtgaaaactccgtttgctacaacgaagagataatgtagcctatgag 31314998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 31315107 - 31315065
Alignment:
Q  312 aaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||| ||||||||||||||||||||| |||||||    
T  31315107 aaaactctgtttgctacaacgaagagataatgtagcctatgag 31315065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 31315177 - 31315135
Alignment:
Q  312 aaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||| ||||||||||||||||||||| |||||||    
T  31315177 aaaactctgtttgctacaacgaagagataatgtagcctatgag 31315135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 351
Target Start/End: Original strand, 31346934 - 31346988
Alignment:
Q  297 atagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctat 351  Q
    |||||||||||||  ||||||| ||||| ||||||||||||||||||||| ||||    
T  31346934 atagtaacaaatgtgaaaactccgtttgctacaacgaagagataatgtagcctat 31346988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 362
Target Start/End: Original strand, 31347000 - 31347066
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgagatatggct 362  Q
    |||||||| |||||  ||||||| ||||| |||||||||||||||||||||  ||||||||| ||||    
T  31347000 catagtaaaaaatgtgaaaactccgtttgctacaacgaagagataatgtagcatatgagatacggct 31347066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 31347067 - 31347125
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||||| |||||  ||||||| ||||| ||||||||||||||||||||| |||||||    
T  31347067 catagtaaaaaatgtgaaaactccgtttgctacaacgaagagataatgtagcctatgag 31347125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 305 - 362
Target Start/End: Complemental strand, 31315252 - 31315195
Alignment:
Q  305 aaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgagatatggct 362  Q
    |||||| |||| || ||||| ||||||||||||||||||||| ||||||| |||||||    
T  31315252 aaatgcgaaaaatccgtttgctacaacgaagagataatgtagcctatgaggtatggct 31315195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 2743383 - 2743424
Alignment:
Q  313 aaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  2743383 aaactccgtttgctacaacgaagagataatgtagcctatgag 2743424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 2743449 - 2743490
Alignment:
Q  313 aaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  2743449 aaactccgtttgctacaacgaagagataatgtagcctatgag 2743490  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 2743515 - 2743556
Alignment:
Q  313 aaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  2743515 aaactccgtttgctacaacgaagagataatgtagcctatgag 2743556  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 357
Target Start/End: Original strand, 11951282 - 11951319
Alignment:
Q  320 gtttgttacaacgaagagataatgtagtctatgagata 357  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  11951282 gtttgctacaacgaagagataatgtagcctatgagata 11951319  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 15088641 - 15088591
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtag 346  Q
    ||||||||||||||||||||||| ||||| || ||||||||||||||||||    
T  15088641 catagtaacaaatgcaaaaactccgtttgctaaaacgaagagataatgtag 15088591  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 22208038 - 22207980
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||| |||||| |||||||| |||||| |||||||||||||| |||||||    
T  22208038 catagtaacaaattcaaaaattctgtttgctacaaccaagagataatgtagcctatgag 22207980  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 22211249 - 22211199
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtag 346  Q
    ||||||||||||||||||||||| ||||| || ||||||||||||||||||    
T  22211249 catagtaacaaatgcaaaaactccgtttgctaaaacgaagagataatgtag 22211199  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 311 - 346
Target Start/End: Original strand, 14114823 - 14114858
Alignment:
Q  311 aaaaactctgtttgttacaacgaagagataatgtag 346  Q
    |||||||||||||| |||||||||||||||||||||    
T  14114823 aaaaactctgtttgctacaacgaagagataatgtag 14114858  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 311 - 362
Target Start/End: Complemental strand, 22207751 - 22207700
Alignment:
Q  311 aaaaactctgtttgttacaacgaagagataatgtagtctatgagatatggct 362  Q
    |||||||  ||||| ||||||||||||||||||||| |||||||||| ||||    
T  22207751 aaaaacttcgtttgctacaacgaagagataatgtagcctatgagatacggct 22207700  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 22207699 - 22207649
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtag 346  Q
    |||||||| |||||  |||| || |||||||||||||||||||||||||||    
T  22207699 catagtaataaatgtgaaaattccgtttgttacaacgaagagataatgtag 22207649  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 22207819 - 22207777
Alignment:
Q  312 aaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||| ||||| ||||||||||||||||||||| |||||||    
T  22207819 aaaactccgtttgctacaacgaagagataatgtagcctatgag 22207777  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 51844422 - 51844364
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||| ||||| ||| ||| ||||| |||| |||||||||||||||| |||||||    
T  51844422 catagtaacgaatgcgaaatctccgtttgctacagcgaagagataatgtagcctatgag 51844364  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 351
Target Start/End: Original strand, 14114754 - 14114794
Alignment:
Q  311 aaaaactctgtttgttacaacgaagagataatgtagtctat 351  Q
    |||||||| ||||| ||||||||||||||||||||| ||||    
T  14114754 aaaaactccgtttgctacaacgaagagataatgtagcctat 14114794  T

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Target: scaffold0060 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 359
Target Start/End: Original strand, 39927 - 39974
Alignment:
Q  312 aaaactctgtttgttacaacgaagagataatgtagtctatgagatatg 359  Q
    |||| |||||||| ||||||||||||||||||||| ||||||| ||||    
T  39927 aaaattctgtttgctacaacgaagagataatgtagcctatgaggtatg 39974  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 311 - 354
Target Start/End: Complemental strand, 41528698 - 41528655
Alignment:
Q  311 aaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    |||||||| ||||| ||||||||||||||||||||| |||||||    
T  41528698 aaaaactccgtttgctacaacgaagagataatgtagcctatgag 41528655  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 41528514 - 41528457
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||||  ||| ||| ||||| ||||||||||||||||||||| |||||||    
T  41528514 catagtaacaaatgtgaaa-ctccgtttgctacaacgaagagataatgtagcctatgag 41528457  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 41528580 - 41528523
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||||  ||| ||| ||||| ||||||||||||||||||||| |||||||    
T  41528580 catagtaacaaatgtgaaa-ctccgtttgctacaacgaagagataatgtagcctatgag 41528523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 41528646 - 41528589
Alignment:
Q  296 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||||||||||||  ||| ||| ||||| ||||||||||||||||||||| |||||||    
T  41528646 catagtaacaaatgtgaaa-ctccgtttgctacaacgaagagataatgtagcctatgag 41528589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 354
Target Start/End: Original strand, 37368910 - 37368959
Alignment:
Q  305 aaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 354  Q
    ||||| ||||| || ||||| ||||||||||||||||||||| |||||||    
T  37368910 aaatgtaaaaaatccgtttgctacaacgaagagataatgtagcctatgag 37368959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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