View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_113 (Length: 359)
Name: NF10481A_low_113
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_113 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 10 - 353
Target Start/End: Original strand, 28768169 - 28768512
Alignment:
| Q |
10 |
gatgaagaccataaagaattcggagcaatggagggaacaaaaccactactaagaagcctctcaacatgcttaccaagaacatcaacttcaagattaacct |
109 |
Q |
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| T |
28768169 |
gatgaagaccataaagaattcggcgcaatggagggaacaaaaccactactaagaagcctctcaacatgcttaccaagaacatcaacttcaagattaacct |
28768268 |
T |
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| Q |
110 |
tttgaccaaccttcttcatgggaacaacaatcttattctgagtataagcaaccaacataaaattgaaacaaccttcatcatcaaaaacatcaaccacagt |
209 |
Q |
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| T |
28768269 |
tttgaccaatcttcttcatgggaacaacaatcttattctgagtataagcaaccaacataaaattgaaacaaccttcatcgtcaaaaacatcaaccacagt |
28768368 |
T |
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| Q |
210 |
caaactagtcccatccacagcaataaaccctttaggaacaatatacttcaacaactccttcttctcaaccctaatcttcacccacaacgaatccccttca |
309 |
Q |
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| T |
28768369 |
caaactagtcccatccacagcaataaaccctttaggaacaatatacttcaacaactccttcttctcaaccctaatcttcacccacaacgaatccccttca |
28768468 |
T |
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| Q |
310 |
ggaatcatcgaaacaatctcccccgtgccatccacgtgaccttg |
353 |
Q |
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| T |
28768469 |
ggaatcatcgaaacaatctcccccgtgccatccacgtgaccttg |
28768512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 61 - 350
Target Start/End: Complemental strand, 89879 - 89590
Alignment:
| Q |
61 |
agaagcctctcaacatgcttaccaagaacatcaacttcaagattaaccttttgaccaaccttcttcatgggaacaacaatcttattctgagtataagcaa |
160 |
Q |
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||||||||||| |||| ||| ||||||| |||||||||||||||||||||||| ||||| ||||||| |||| ||||||||| ||||||| ||||||| |
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| T |
89879 |
agaagcctctccacatacttgccaagaatatcaacttcaagattaaccttttgtccaacattcttcaaaggaataacaatcttgctctgagtgtaagcaa |
89780 |
T |
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| Q |
161 |
ccaacataaaattgaaacaaccttcatcatcaaaaacatcaaccacagtcaaactagtcccatccacagcaataaaccctttaggaacaatatacttcaa |
260 |
Q |
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||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | |
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| T |
89779 |
ccaacatgaaattgaaacaagcttcatcatcaaaaacatcaaccacagtcaaactagtcccatccacagcaatgaaccctttaggtacaatatacttaag |
89680 |
T |
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| Q |
261 |
caactccttcttctcaaccctaatcttcacccacaacgaatccccttcaggaatcatcgaaacaatctcccccgtgccatccacgtgacc |
350 |
Q |
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||| ||| ||| | |||||||| ||| | |||||| ||||||| |||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
89679 |
caaatccaccttattaaccctaaccttaatccacaaagaatccctttcaggaaccatagaaacaatctcccccgtgccatccacgtgacc |
89590 |
T |
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