View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_114 (Length: 358)

Name: NF10481A_low_114
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_114
NF10481A_low_114
[»] chr3 (15 HSPs)
chr3 (159-352)||(8260709-8260902)
chr3 (159-349)||(8265675-8265866)
chr3 (159-349)||(8258602-8258796)
chr3 (8-94)||(8260558-8260644)
chr3 (165-256)||(8350129-8350220)
chr3 (32-94)||(8350014-8350076)
chr3 (159-256)||(8352867-8352964)
chr3 (35-94)||(8258478-8258537)
chr3 (35-94)||(8265551-8265610)
chr3 (165-236)||(8252975-8253046)
chr3 (20-90)||(8334002-8334073)
chr3 (53-94)||(8352761-8352802)
chr3 (161-233)||(8356436-8356508)
chr3 (39-94)||(8252867-8252922)
chr3 (161-233)||(8360609-8360681)


Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 159 - 352
Target Start/End: Original strand, 8260709 - 8260902
Alignment:
Q  159 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcacttt 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8260709 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcacttt 8260808  T
Q  259 gaagagggttttctgtttatggaagtgtgaaaagctgaaatgatttagttgtaggttgaacttcatgtagttaacttgatctatttatagatat 352  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8260809 gaagagggttttctgtttatgtaagtgtggaaagctgaaatgatttagttgtaggttgaacttcatgtagttaacttgatctatttatagatat 8260902  T

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Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 159 - 349
Target Start/End: Original strand, 8265675 - 8265866
Alignment:
Q  159 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaa-agtgatttaatttgcactt 257  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  8265675 atcataatcagaaacttgagacgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccataaaaaaagtgatttaatttgcactt 8265774  T
Q  258 tgaagagggttttctgtttatggaagtgtgaaaagctgaaatgatttagttgtaggttgaacttcatgtagttaacttgatctatttataga 349  Q
    ||||| ||||||  |||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||    
T  8265775 tgaagtgggtttcttgtttatgtaagtgtggaaagctgaaatgatttagttgtgggttgaacttcatgtaattaacttgatccatttataga 8265866  T

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Target: chr3; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 159 - 349
Target Start/End: Original strand, 8258602 - 8258796
Alignment:
Q  159 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaa-agtgatttaatttgcactt 257  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||| | |||||||||||||||||| |||| |||||||||||||||||||    
T  8258602 atcataatcagaaacttgagatgatgagtttgaagaatggccaaagcaacttaaaatggatgaaatcaaagccataaaaaaagtgatttaatttgcactt 8258701  T
Q  258 tgaagagggttttctgtttatggaagtgtgaaaagctgaaatgatttagttgtaggttgaacttcatgtagt---taacttgatctatttataga 349  Q
    ||||| ||||||| |||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| |   ||||||||||||||||||||    
T  8258702 tgaagtgggttttttgtttatgtaagtgtgcaaagctgaaatgatttagttgtgggttgaacttcatgtaattaataacttgatctatttataga 8258796  T

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Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 8260558 - 8260644
Alignment:
Q  8 aagaaagtggatgcagattaatactgcatgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8260558 aagaaagtggatgcagattaatactgcatgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 8260644  T

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Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 165 - 256
Target Start/End: Original strand, 8350129 - 8350220
Alignment:
Q  165 atcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcact 256  Q
    ||||||||||||||| ||||||| | ||||| | ||||| ||| | ||||| ||||||||||||||||||||||||||||||||||||||||    
T  8350129 atcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaaaaagtgatttaatttgcact 8350220  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 8350014 - 8350076
Alignment:
Q  32 tgcatgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 94  Q
    ||||||||||||| |||||| ||||| |||||||||||||||||||||||| |||||||||||    
T  8350014 tgcatgactacaagcgtgagggataatagttaacagggaaataagaaactataattggagctc 8350076  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 159 - 256
Target Start/End: Original strand, 8352867 - 8352964
Alignment:
Q  159 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcact 256  Q
    |||||||||| |||||||||| |||||||   ||||| | ||||||||| | || || ||||||||||||||||||||||||||||||  ||||||||    
T  8352867 atcataatcataaacttgagaagatgagttcgaagaaggaccaaagcaattgaaaaatgatgaaatcaaagccatcaaaaagtgatttggtttgcact 8352964  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 8258478 - 8258537
Alignment:
Q  35 atgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 94  Q
    |||||||||||||||||||||||||||||  |||||||| | | ||||||||||||||||    
T  8258478 atgactacaaacgtgagagataagagttagtagggaaatgatatactacaattggagctc 8258537  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 8265551 - 8265610
Alignment:
Q  35 atgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 94  Q
    ||||||||||||| ||||||||||||||| ||||||||| | | ||||||||||||||||    
T  8265551 atgactacaaacgagagagataagagttagcagggaaatgatatactacaattggagctc 8265610  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 8252975 - 8253046
Alignment:
Q  165 atcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaa 236  Q
    ||||||||||||||| ||||||| | ||||| | ||||| ||| | ||||| ||||||||||||||||||||    
T  8252975 atcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaa 8253046  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 8334002 - 8334073
Alignment:
Q  20 gcagattaatactgcatgactacaaacgtgagag-ataagagttaacagggaaataagaaactacaattgga 90  Q
    |||||||||||| || ||||||||| |||||| | |||| |||||||  |||||||||||||||||||||||    
T  8334002 gcagattaataccgcctgactacaagcgtgaggggataatagttaacgaggaaataagaaactacaattgga 8334073  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 8352761 - 8352802
Alignment:
Q  53 gataagagttaacagggaaataagaaactacaattggagctc 94  Q
    ||||| |||||||||||||||||||||||||||||| |||||    
T  8352761 gataatagttaacagggaaataagaaactacaattgaagctc 8352802  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 8356436 - 8356508
Alignment:
Q  161 cataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccat 233  Q
    ||||||||||||||||||||||||||| | ||||  | ||||||||| | ||||| | | |||||||||||||    
T  8356436 cataatcagaaacttgagatgatgagtttgaagagagaccaaagcaattgaagaacggtaaaatcaaagccat 8356508  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 8252867 - 8252922
Alignment:
Q  39 ctacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 94  Q
    |||||| ||||||||| ||  |||||||| ||||||||||||| ||||||||||||    
T  8252867 ctacaagcgtgagagacaattgttaacagagaaataagaaactgcaattggagctc 8252922  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 8360609 - 8360681
Alignment:
Q  161 cataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccat 233  Q
    ||||||||||||||||||||||| ||| | ||||  | || |||||| | ||||| | |||||||||||||||    
T  8360609 cataatcagaaacttgagatgataagtttgaagagagaccgaagcaattgaagaaagctgaaatcaaagccat 8360681  T

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