View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_12 (Length: 527)
Name: NF10481A_low_12
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_12 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 12 - 527
Target Start/End: Original strand, 45304518 - 45305035
Alignment:
| Q |
12 |
gagaatagacctctgcaagaggaagagtactggtactggaatttgtagatggtagccagtttttagtgtgttcaacttcaaacactgtcctacttgcgcc |
111 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45304518 |
gagaatagacctctgcaagatgaagagtactggtactggaatttgtagatggtagccagtttttagtgtgttcaacttcaaacactgtcctacttgcgcc |
45304617 |
T |
|
| Q |
112 |
tgttgacnnnnnnnnnnnnnnnnnngaatataactttacatctcaaccaacaagaatgagaaaaagcatgtcatctatgtatgta----ataaggatatt |
207 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45304618 |
tgttgacaaaaagaaaaacaaaaaagaatataactttacatctcaaccaacaagaatgagaaaaagcatgtcatctatgtatgtatgtaataaggatatt |
45304717 |
T |
|
| Q |
208 |
cctctaacacaaaataattacagttattaattaataattacctaagtctttcttttcaatagcagaatcaaactcagcagctgctgattccatttgacgc |
307 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
45304718 |
cctctaacacaa--taattacagttattaattaataattacctaagtctttcttttcaagagcagaatcaaactcagcagccgctgattccatttgacgc |
45304815 |
T |
|
| Q |
308 |
cgtcgtttttgcctttctctggctttgtgattctgaaaccaatagaaaacatttttgccttcaatttttccaaattttctaagctgggcagttatttgtt |
407 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45304816 |
cgtcgtttttgcctttctcttgctttgtgattctgaaaccaatagaaaacatttttgccttcaatttttccaaattttctaagctgggcagttatttgtt |
45304915 |
T |
|
| Q |
408 |
ggatttgctcagcagaaggtgttcttgttcctcttctatacaattcttccagtgctcttaactgttctggtgttggattccatcttgaactcaccacaac |
507 |
Q |
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| T |
45304916 |
ggatttgctcagcagaaggtgttcttgttcctcttctatacaattcttccagtgctcttaactgttctggtgttggattccatcttgaactcaccacaac |
45305015 |
T |
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| Q |
508 |
tgctgcagatggattattat |
527 |
Q |
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|||||||||||||||||||| |
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| T |
45305016 |
tgctgcagatggattattat |
45305035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 298 - 463
Target Start/End: Original strand, 40004887 - 40005052
Alignment:
| Q |
298 |
catttgacgccgtcgtttttgcctttctctggctttgtgattctgaaaccaatagaaaacatttttgccttcaatttttccaaattttctaagctgggca |
397 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40004887 |
catttgacggcgtcgtttttgcctttctctggctttgtgattctgaaaccaatagaaaacatttttgccttcaatttttccaatttttctaagctgggca |
40004986 |
T |
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| Q |
398 |
gttatttgttggatttgctcagcagaaggtgttcttgttcctcttctatacaattcttccagtgct |
463 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40004987 |
gtgatttgttggatttgctcagcagaaggtgttcttgttcctcttctatacaattcttccactgct |
40005052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 145; Significance: 4e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 298 - 458
Target Start/End: Complemental strand, 40220659 - 40220499
Alignment:
| Q |
298 |
catttgacgccgtcgtttttgcctttctctggctttgtgattctgaaaccaatagaaaacatttttgccttcaatttttccaaattttctaagctgggca |
397 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40220659 |
catttgacggcgtcgtttttgcctttctctggctttgtgattctgaaaccaatagaaaacatttttgccttcaatttttccaaattttctaagctgggca |
40220560 |
T |
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| Q |
398 |
gttatttgttggatttgctcagcagaaggtgttcttgttcctcttctatacaattcttcca |
458 |
Q |
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|| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40220559 |
gtgatctgttggatttgctcagcataaggtgttcttgttcctcttctatacaattcttcca |
40220499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 430
Target Start/End: Complemental strand, 32906818 - 32906711
Alignment:
| Q |
323 |
tctctggctttgtgattctgaaaccaatagaaaacatttttgccttcaatttttccaaattttctaagctgggcagttatttgttggatttgctcagcag |
422 |
Q |
| |
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||||| || ||||||||||| ||||||||||| |||||||| |||||||| || || |||| || |||||| | || |||||||||||||| ||||| | |
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| T |
32906818 |
tctctcgccttgtgattctggaaccaatagaacacattttttccttcaatcttcccgaattgtcgaagctgcgaagcaatttgttggatttgttcagctg |
32906719 |
T |
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| Q |
423 |
aaggtgtt |
430 |
Q |
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| T |
32906718 |
atggtgtt |
32906711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 372
Target Start/End: Original strand, 8554837 - 8554889
Alignment:
| Q |
320 |
ctttctctggctttgtgattctgaaaccaatagaaaacatttttgccttcaat |
372 |
Q |
| |
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|||||||| ||||||||||| ||||||||||| || ||||||||||||||||| |
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| T |
8554837 |
ctttctctagctttgtgattttgaaaccaataaaagacatttttgccttcaat |
8554889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 365
Target Start/End: Original strand, 35184611 - 35184665
Alignment:
| Q |
311 |
cgtttttgcctttctctggctttgtgattctgaaaccaatagaaaacatttttgc |
365 |
Q |
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|||||||| |||||||| ||||||||||| |||||||||||||| ||||| |||| |
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| T |
35184611 |
cgtttttgtctttctctagctttgtgattttgaaaccaatagaacacattcttgc |
35184665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 369
Target Start/End: Original strand, 21930100 - 21930134
Alignment:
| Q |
335 |
tgattctgaaaccaatagaaaacatttttgccttc |
369 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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| T |
21930100 |
tgattctgaaaccaatagaaaacattttttccttc |
21930134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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