View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10481A_low_121 (Length: 354)
Name: NF10481A_low_121
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_121 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 12 - 349
Target Start/End: Complemental strand, 4904191 - 4903854
Alignment:
| Q |
12 |
acaatgaacaactgaacccaaacagaaaaacacgtaacaaacagaccaactacaaacaatcctaaagaagcagcttagaagctaactgcctacaccagga |
111 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4904191 |
acaatgaacaacagaacccaaacagaaaaacacctaacaaacagaccaactacaatcattcctaaagaagcagcttagaagctaactgcctacaccagaa |
4904092 |
T |
|
| Q |
112 |
ccgaaaaccagcaccgcaacagactgttaagccagagaaacacgactacagaacaaccagaaggccaccaaacagccacacagccaaagaagccagcatc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4904091 |
ccgaaaaccagcaccgcaacagactgttaaaccagagaaacacgactacagaacaaccagaaggccaccaaacagccacacagccaaagaagccagcatc |
4903992 |
T |
|
| Q |
212 |
accgcaacaaacaatccttcggattccaattccactcataaaacaaacacgcgtatgaattcaacctacccaaaaaccacctccaagacaacaccttaac |
311 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4903991 |
accgcaacaaacaatccttcagattccaattccactcataaaacaaaaacgcgtacgaattcaacctacccaaaaaccatctccaagacaacaccttaac |
4903892 |
T |
|
| Q |
312 |
agattccaacaactcctccacatctgtcacaacattgt |
349 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4903891 |
agattccaacagctcctccacatctgtcacaacattgt |
4903854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 320
Target Start/End: Complemental strand, 1557474 - 1557359
Alignment:
| Q |
205 |
cagcatcaccgcaacaaacaatccttcggattccaattccactcataaaacaaacacgcgtatgaattcaacctacccaaaaaccacctccaagacaaca |
304 |
Q |
| |
|
|||| ||| ||||||| ||||| |||||||||||||||||| || ||||||||||| || | |||| ||||||||| |||||||||| ||||| | |
|
|
| T |
1557474 |
cagcctcaacgcaacagacaattcttcggattccaattccattcgtaaaacaaacaagctggcaagctcaatctacccaaacaccacctccacgacaata |
1557375 |
T |
|
| Q |
305 |
ccttaacagattccaa |
320 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
1557374 |
ccttaattgattccaa |
1557359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 15 - 349
Target Start/End: Original strand, 22153372 - 22153703
Alignment:
| Q |
15 |
atgaacaactgaacccaaacag-aaaaacacgtaacaaacagaccaactacaaacaatcctaaagaagcagcttagaagctaactgcctacaccaggacc |
113 |
Q |
| |
|
|||||||| ||| |||||||| |||||||| |||||||||||||||| || | ||||| |||||||| ||||||||||| ||||||| || |
|
|
| T |
22153372 |
atgaacaatagaaaccaaacaggaaaaacacctaacaaacagaccaacagcactccttcctatagaagcag-----aagctaactgcatacaccataact |
22153466 |
T |
|
| Q |
114 |
gaaaaccagcaccgcaacagactgtta-agccagagaaacacgactacagaacaaccagaaggccaccaaacagccacacagccaaagaagccagcatca |
212 |
Q |
| |
|
||||||||||||| ||| ||||||||| | |||||||||| ||||| || |||||||||||||| ||||||||||| |||| |||||||||||||||||| |
|
|
| T |
22153467 |
gaaaaccagcaccacaatagactgttataaccagagaaacgcgactgcataacaaccagaaggcgaccaaacagccgcacaaccaaagaagccagcatca |
22153566 |
T |
|
| Q |
213 |
ccgcaacaaacaatccttcggattccaattccactcataaaacaaacacgcgtatgaattcaacctacccaaaaaccacctccaagacaacaccttaaca |
312 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
22153567 |
ccgcaacaaacaaaccttcggattccaattccactcataaaacaaacacgcgtgcgaattcaacctacccaaaaatcacctccaagacaacaccttaaaa |
22153666 |
T |
|
| Q |
313 |
gattccaacaactcctccacatctgtcacaacattgt |
349 |
Q |
| |
|
|||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
22153667 |
gattccaacagcttctccacatctgtcacaatattgt |
22153703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 15 - 349
Target Start/End: Original strand, 22209287 - 22209618
Alignment:
| Q |
15 |
atgaacaactgaacccaaacag-aaaaacacgtaacaaacagaccaactacaaacaatcctaaagaagcagcttagaagctaactgcctacaccaggacc |
113 |
Q |
| |
|
|||||||| ||| |||||||| |||||||| |||||||||||||||| || | ||||| |||||||| ||||||||||| ||||||| || |
|
|
| T |
22209287 |
atgaacaatagaaaccaaacaggaaaaacacctaacaaacagaccaacagcactccttcctatagaagcag-----aagctaactgcatacaccataact |
22209381 |
T |
|
| Q |
114 |
gaaaaccagcaccgcaacagactgtta-agccagagaaacacgactacagaacaaccagaaggccaccaaacagccacacagccaaagaagccagcatca |
212 |
Q |
| |
|
||||||||||||| ||| ||||||||| | |||||||||| ||||| || |||||||||||||| ||||||||||| |||| |||||||||||||||||| |
|
|
| T |
22209382 |
gaaaaccagcaccacaatagactgttataaccagagaaacgcgactgcataacaaccagaaggcgaccaaacagccgcacaaccaaagaagccagcatca |
22209481 |
T |
|
| Q |
213 |
ccgcaacaaacaatccttcggattccaattccactcataaaacaaacacgcgtatgaattcaacctacccaaaaaccacctccaagacaacaccttaaca |
312 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
22209482 |
ccgcaacaaacaaaccttcggattccaattccactcataaaacaaacacgcgtgcgaattcaacctacccaaaaatcacctccaagacaacaccttaaaa |
22209581 |
T |
|
| Q |
313 |
gattccaacaactcctccacatctgtcacaacattgt |
349 |
Q |
| |
|
|||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
22209582 |
gattccaacagcttctccacatctgtcacaatattgt |
22209618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 38185265 - 38185318
Alignment:
| Q |
207 |
gcatcaccgcaacaaacaatccttcggattccaattccactcataaaacaaaca |
260 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38185265 |
gcatcaccgcaacaagcattccttcggattccaattccactcgtaaaacaaaca |
38185318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 310
Target Start/End: Original strand, 43073753 - 43073787
Alignment:
| Q |
276 |
cctacccaaaaaccacctccaagacaacaccttaa |
310 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43073753 |
cctacccaacaaccacctccaagacaacaccttaa |
43073787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University