View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_122 (Length: 354)
Name: NF10481A_low_122
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_122 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 8 - 335
Target Start/End: Original strand, 5826964 - 5827291
Alignment:
| Q |
8 |
atataatactagatggactgaatatcaaaactttcaaactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaag |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5826964 |
atatattactagatggactgaatatcaaaactttcaaactaagctggttgagacaacaaatgggtttggttggtcaagagcctattcttttcaacgaaag |
5827063 |
T |
|
| Q |
108 |
cattcgtgccaacatagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5827064 |
cattcgtgccaacatagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaacttcataagctct |
5827163 |
T |
|
| Q |
208 |
cttccaggtggttacaatacatcggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaacc |
307 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5827164 |
cttccaggtggttacaatacttcggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaacc |
5827263 |
T |
|
| Q |
308 |
ctagaatacttttacttgatgaggcaac |
335 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
5827264 |
ctagaatacttttacttgatgaggcaac |
5827291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 9 - 332
Target Start/End: Original strand, 5768512 - 5768835
Alignment:
| Q |
9 |
tataatactagatggactgaatatcaaaactttcaaactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagc |
108 |
Q |
| |
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|||| ||||||||||| || |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5768512 |
tatattactagatggagtggatataaaaactttcagactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagc |
5768611 |
T |
|
| Q |
109 |
attcgtgccaacatagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctc |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||| |
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| T |
5768612 |
attcgtgccaacatagcttatggcaaagaaggaggtgctatggaggatgagataattgcagcagctaaagcagccaatgcacacaatttcataagctctc |
5768711 |
T |
|
| Q |
209 |
ttccaggtggttacaatacatcggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccc |
308 |
Q |
| |
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||||| |||||| | || || || || ||||||||||||||| ||||||| ||||| || || ||||| || ||||||||||| || |||||||||| |
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| T |
5768712 |
ttccaaatggttatgacacctctgtcggggaaagaggcacacagctatcaggaggacagaagcagcgtattgctattgcaagagccatgctgaaaaaccc |
5768811 |
T |
|
| Q |
309 |
tagaatacttttacttgatgaggc |
332 |
Q |
| |
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| ||||||||| ||||| ||||| |
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|
| T |
5768812 |
caaaatacttttgcttgacgaggc |
5768835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 9 - 332
Target Start/End: Complemental strand, 5829936 - 5829613
Alignment:
| Q |
9 |
tataatactagatggactgaatatcaaaactttcaaactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagc |
108 |
Q |
| |
|
|||| ||||||||||| || || |||||||||||| | ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
5829936 |
tatattactagatggagtggatctcaaaactttcagattaagctggttgagacaacaaatggggttggttggtcaagagcctattcttttcaacgaaagc |
5829837 |
T |
|
| Q |
109 |
attcgtgccaacatagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctc |
208 |
Q |
| |
|
|||||||| ||||||| |||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||||| ||| ||||| || |
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| T |
5829836 |
attcgtgctaacataggttatggaaaagaagggggtgctacagaggatgagatcattgcagcagctaacgcagcaaatgcacacagcttcataagtaatc |
5829737 |
T |
|
| Q |
209 |
ttccaggtggttacaatacatcggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccc |
308 |
Q |
| |
|
|||||| ||| || | || || || || ||||||||||| || | || || ||||| || || || || || ||||||||| | || | |||||||| |
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| T |
5829736 |
ttccagatggatatgacacgtctgttggagaaagaggcacgcaactgtccggaggacagaagcagcgcattgctattgcaagaaccatgctaaaaaaccc |
5829637 |
T |
|
| Q |
309 |
tagaatacttttacttgatgaggc |
332 |
Q |
| |
|
| ||||||||| ||||||||||| |
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| T |
5829636 |
caaaatacttttgcttgatgaggc |
5829613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 237 - 335
Target Start/End: Original strand, 5794793 - 5794883
Alignment:
| Q |
237 |
cgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatacttttacttgatgaggcaac |
335 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5794793 |
cgaaagaggcacacagttaccaggtggacaaaaacaatgt--------tgcaagagctatattgaaagaccctagaatacttttacttgatgaggcaac |
5794883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 14 - 335
Target Start/End: Complemental strand, 29327445 - 29327124
Alignment:
| Q |
14 |
tactagatggactgaatatcaaaactttcaaactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcg |
113 |
Q |
| |
|
||||||||||| || ||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29327445 |
tactagatggagtggatatcaaaactttcagaataagctggttgagacaacaaatgggtttggttggtcaagagcctattcttttcaacgaaagcattcg |
29327346 |
T |
|
| Q |
114 |
tgccaacatagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctcttcca |
213 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||| || |||||||| ||||||||||||||||||||||| ||||| |||||||| |
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| T |
29327345 |
cgccaacatagcttatggtaaagaagatggtgctacggaggatgagatcatagcagcagcgaacgcagccaatgcacacaacttcataagttctcttcct |
29327246 |
T |
|
| Q |
214 |
ggtggttacaatacatcggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaa |
313 |
Q |
| |
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| |||||| | || || || ||||||||||||||||| |||| || ||||| || || || || || ||||||||||| || |||||||||||| || |
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| T |
29327245 |
gatggttatgacacttctgttggcgaaagaggcacacaactatctggaggacagaagcagcgcattgcgattgcaagagccatgctgaaaaaccctaaaa |
29327146 |
T |
|
| Q |
314 |
tacttttacttgatgaggcaac |
335 |
Q |
| |
|
||||||| |||||||||||||| |
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|
| T |
29327145 |
tacttttgcttgatgaggcaac |
29327124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 3431268 - 3431216
Alignment:
| Q |
253 |
ttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaa |
305 |
Q |
| |
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||||| ||||||||||| ||| | || ||||||||||||||||| |||||||| |
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|
| T |
3431268 |
ttatctggtggacaaaagcaaaggattgcaattgcaagagctatgttgaaaaa |
3431216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 287
Target Start/End: Complemental strand, 17872447 - 17872391
Alignment:
| Q |
231 |
ggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgc |
287 |
Q |
| |
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|||||| |||||||| | || ||||||||||||||||||||| | ||||||||||| |
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|
| T |
17872447 |
ggtaggagaaagagggattcaattatcaggtggacaaaaacaaagaatagcaattgc |
17872391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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