View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_124 (Length: 353)
Name: NF10481A_low_124
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_124 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 2 - 340
Target Start/End: Complemental strand, 34093069 - 34092731
Alignment:
| Q |
2 |
atgagatggacatcatcacatatacctaacctaatgcctcttcttcatttttctagctaccaatgtctttttcatctttgaattaatatatgctctaata |
101 |
Q |
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| T |
34093069 |
atgaggtggacatcatcacatttacctaacctaatgcctcttcttcatttttctagctaccaatgtctttttcatctttgaattaatatatgctctaata |
34092970 |
T |
|
| Q |
102 |
gccaacgataatgatttgcatacaatgtaattgtttcttttatttcaagtggttgtgtatatataatgtgagatttgtttagccaattattcaatatcaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34092969 |
gccaacgataatgatttgcatacaatgtaattgtttcttttatttcaagtggttgtgtatatataatgtgagatttgttttgccaattattcaatatcaa |
34092870 |
T |
|
| Q |
202 |
tctgactttggcaaagtttctcattgagaaaagtcctaatcatgtatttnnnnnnnnnnnnnnnnnnngtttatgaagagttatatctctttctttttat |
301 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34092869 |
tctgactttggcaaagtttcttattgagaaaagtcctaatcatgtatttaaaaactaaaaataaaaaagtttatgaagagttatatctctttctttttat |
34092770 |
T |
|
| Q |
302 |
ttttgtttgcagacaaaatgataatggtgatccaaataa |
340 |
Q |
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|||||||||||||| ||||||| |||||||||||||||| |
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| T |
34092769 |
ttttgtttgcagacgaaatgattatggtgatccaaataa |
34092731 |
T |
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