View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_127 (Length: 353)
Name: NF10481A_low_127
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_127 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 20 - 351
Target Start/End: Complemental strand, 47467372 - 47467041
Alignment:
| Q |
20 |
gtaggaacaactaagataaaaaatcttgaaagtaatatcagttcgtttaaagtgaaactcaacaaaaatgatttgaaggagattgaagatgctgtgccaa |
119 |
Q |
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| T |
47467372 |
gtaggaacaactaagataaaaaatcttgaaagtaatatcagttcgtttaaagtgaaactcaacaaaaatgatttgaaggagattgaagatgctgtgccaa |
47467273 |
T |
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| Q |
120 |
tatctgaggtgtcaggggatcagacaactggtgcttttgttcaatgttcttggaagtttgctaatactccaacaaaatcatagcttgatgccagttttgt |
219 |
Q |
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| T |
47467272 |
tatctgaggtgtcaggggatcggacaactggtgcttttgttcaatgttcttggaagtttgctaatactccaacaaaatcatagcttgatgccagttttgt |
47467173 |
T |
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| Q |
220 |
acctcagtgtttgagactcaaactagtttctggtctctttgaatgttgttaaaaatttaatcccatataataaaaccgattgttattggtcgaatgcgga |
319 |
Q |
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| T |
47467172 |
acctcagtgtttgagactcaaactagtttctggtctctttgaatgttgttaaaaatttaatcccatataataaaaccgattgtcattggtcgaatgcgga |
47467073 |
T |
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| Q |
320 |
taactcagcaaaatctgtgtttcatgcttagt |
351 |
Q |
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| T |
47467072 |
taactcagcaaaatttgtgtttcatgcttagt |
47467041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 112 - 349
Target Start/End: Original strand, 47227346 - 47227578
Alignment:
| Q |
112 |
tgtgccaatatctgaggtgtcaggggatcagacaactggtgcttttgttcaatgttcttggaagtttgctaatactccaacaaaatcatagcttgatgcc |
211 |
Q |
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| T |
47227346 |
tgtgccaatatctgaggtgtcaggggatcggacaactgatggttttgttcattgttcatggaagtttgctaatacttcaacaaaagcataccttgatgcc |
47227445 |
T |
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| Q |
212 |
agttttgtacctcagtgtttgagactcaaactagtttctggtctctttgaatgttgttaaaaatttaatcccata-taataaaaccgattgttattggtc |
310 |
Q |
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| T |
47227446 |
ag-tttgtacctc--tgtttgagattcaaactagtttctggtctctttgca---taactcaaagttaatcccatacgaataaaactgattgttattggtt |
47227539 |
T |
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| Q |
311 |
gaatgcggataactcagcaaaatctgtgtttcatgctta |
349 |
Q |
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|||| || ||| |||||| |||| |||||| |||||||| |
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| T |
47227540 |
gaatacgtatagctcagccaaatttgtgttccatgctta |
47227578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 159 - 248
Target Start/End: Complemental strand, 46923195 - 46923105
Alignment:
| Q |
159 |
ttcaatgttcttggaagtttgctaatactcc-aacaaaatcatagcttgatgccagttttgtacctcagtgtttgagactcaaactagttt |
248 |
Q |
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| T |
46923195 |
ttcaatgttcatggaagttttctaatactcccaacaaaagcatagctcgatgccaattttgtacctcagtgtttgagactcaaactagttt |
46923105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 28831076 - 28831015
Alignment:
| Q |
288 |
aataaaaccgattgttattggtcgaatgcggataactcagcaaaatctgtgtttcatgctta |
349 |
Q |
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||||||||| | |||||||||| |||| |||||||||||||||||| ||||||||||||||| |
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| T |
28831076 |
aataaaacctagtgttattggttgaatacggataactcagcaaaatttgtgtttcatgctta |
28831015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 46923015 - 46922960
Alignment:
| Q |
288 |
aataaaaccgattgttattggtcgaatgcggataactcagcaaaatctgtgtttcatgctta |
349 |
Q |
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||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||| |
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| T |
46923015 |
aataaaaccgattgttaatggtcg------gataactcagcaaaatttgtgtttcatgctta |
46922960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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