View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_13 (Length: 525)

Name: NF10481A_low_13
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_13
NF10481A_low_13
[»] chr1 (4 HSPs)
chr1 (3-390)||(49331178-49331567)
chr1 (25-158)||(16887067-16887200)
chr1 (223-399)||(16884338-16884511)
chr1 (218-399)||(17051531-17051709)
[»] chr3 (2 HSPs)
chr3 (17-394)||(21486814-21487193)
chr3 (306-521)||(14753210-14753425)
[»] chr6 (6 HSPs)
chr6 (18-492)||(22724510-22724981)
chr6 (257-489)||(22337266-22337497)
chr6 (257-489)||(22266994-22267225)
chr6 (335-390)||(17795452-17795506)
chr6 (243-285)||(17795360-17795402)
chr6 (227-277)||(23649421-23649471)
[»] chr2 (5 HSPs)
chr2 (19-521)||(23469417-23469917)
chr2 (17-473)||(29798901-29799356)
chr2 (17-115)||(29801309-29801407)
chr2 (227-277)||(18371657-18371707)
chr2 (228-285)||(27878353-27878410)
[»] chr8 (8 HSPs)
chr8 (17-251)||(16722126-16722362)
chr8 (241-489)||(29388645-29388891)
chr8 (17-361)||(40545630-40545974)
chr8 (335-496)||(18450472-18450631)
chr8 (349-521)||(20685307-20685478)
chr8 (335-380)||(14755936-14755980)
chr8 (358-434)||(16722052-16722128)
chr8 (257-309)||(20685216-20685268)
[»] chr7 (7 HSPs)
chr7 (17-218)||(21585459-21585660)
chr7 (305-519)||(8835269-8835479)
chr7 (355-477)||(16030912-16031037)
chr7 (335-384)||(4007114-4007162)
chr7 (335-384)||(4012506-4012554)
chr7 (335-418)||(16177514-16177598)
chr7 (349-390)||(14616345-14616386)
[»] chr4 (9 HSPs)
chr4 (257-521)||(18618462-18618722)
chr4 (349-521)||(20309776-20309947)
chr4 (19-269)||(5505981-5506233)
chr4 (329-489)||(20572601-20572760)
chr4 (335-448)||(45080249-45080361)
chr4 (260-490)||(2767591-2767819)
chr4 (257-360)||(17504602-17504707)
chr4 (298-361)||(17278692-17278755)
chr4 (243-309)||(2758148-2758214)
[»] scaffold0039 (2 HSPs)
scaffold0039 (257-521)||(64123-64385)
scaffold0039 (257-521)||(65982-66244)
[»] scaffold0067 (2 HSPs)
scaffold0067 (335-494)||(12728-12885)
scaffold0067 (335-494)||(19786-19943)
[»] scaffold0027 (1 HSPs)
scaffold0027 (349-522)||(52937-53109)
[»] chr5 (4 HSPs)
chr5 (335-489)||(23909710-23909864)
chr5 (349-384)||(21942626-21942661)
chr5 (349-390)||(17713827-17713868)
chr5 (335-384)||(16510229-16510280)


Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 3 - 390
Target Start/End: Original strand, 49331178 - 49331567
Alignment:
Q  3 tatcacaaacgagccctattaacaataaatctcactaacatctaataaacatagggtatatgaagtaattgtttaaatttaactttcaactttaattgtg 102  Q
    |||||||||| |  |||||||| || ||||| |||||||| ||||||||||  ||||||||||||||||||||| || |||| |||||||||| |||| |    
T  49331178 tatcacaaaccaaacctattaataacaaatcccactaacagctaataaacacggggtatatgaagtaattgtttgaagttaattttcaactttgattggg 49331277  T
Q  103 agaaaattgaattagtaaaatctcaattaagaaaattgagattagattttggtaaattgtaaactcac--tcaaacaacgatcacttcacataatgaatt 200  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||| ||||||    
T  49331278 agaaaattgaattggtaaaatctcaattaagaaaattgagattatattttggtaaattgtaaactcacagtcaaacaacgatcacttcacatagtgaatt 49331377  T
Q  201 catatacacaaatataatgctcaaattaaaaggatagggaagagaagaacacctacatttatagaggttcccccttttagtcctcactaaaggtatgtcc 300  Q
    |||||||||||||||||| || ||||||||||||||||||| ||||||||||  ||| |||||||||||||||||||||||| || ||||| ||| |||     
T  49331378 catatacacaaatataattctgaaattaaaaggatagggaatagaagaacactgacacttatagaggttcccccttttagtcttcgctaaatgtacgtca 49331477  T
Q  301 tctcttcgtgatataaaacacctctatcacggtattccactatgatgaaaaatgtttacaagtgtaagattacaaagattcctttgattc 390  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||| ||||||| ||||||||| |||||||||| ||||| ||||||||    
T  49331478 tctcttcgtgatataaaacacctttatcacggtcttccactatgattaaaaatgcttacaagtgcaagattacaaggattcttttgattc 49331567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 158
Target Start/End: Complemental strand, 16887200 - 16887067
Alignment:
Q  25 caataaatctcactaacatctaataaacatagggtatatgaagtaattgtttaaatttaactttcaactttaattgtgagaaaattgaattagtaaaatc 124  Q
    ||||||||| |||||||| ||||| |||| | ||||||||||  | || ||| || ||||||||||||||| |||| ||||||||| ||||   ||||||    
T  16887200 caataaatcacactaacaactaatgaacacaaggtatatgaatcatttatttgaagttaactttcaactttcattgcgagaaaattaaattgagaaaatc 16887101  T
Q  125 tcaattaagaaaattgagattagattttggtaaa 158  Q
    ||||||||||||||| ||||||||||||||||||    
T  16887100 tcaattaagaaaattaagattagattttggtaaa 16887067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 223 - 399
Target Start/End: Complemental strand, 16884511 - 16884338
Alignment:
Q  223 aaattaaaaggatagggaagagaagaacacctacatttatagaggttcccccttttagtcctcactaaaggtatgtcctctcttcgtgatataaaacacc 322  Q
    ||||||||| |||||||||||||| |||||| | ||||||| |||||| ||||||| ||||||  ||  ||||  || |||||| |||| | ||||| ||    
T  16884511 aaattaaaaagatagggaagagaa-aacaccaagatttataaaggttctcccttttcgtcctcgttag-ggtacatcatctctttgtgaaagaaaacgcc 16884414  T
Q  323 tctatcacggtattccactatgatgaaaaatgtttacaagtgtaagattacaaagattcctttgattctctaatctt 399  Q
    ||||||||||  ||||||||||||| ||||||||||||||||||  ||||||||| ||  || ||||| ||||||||    
T  16884413 tctatcacgggcttccactatgatg-aaaatgtttacaagtgtataattacaaagttttattcgattccctaatctt 16884338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 218 - 399
Target Start/End: Original strand, 17051531 - 17051709
Alignment:
Q  218 tgctcaaattaaaaggatagggaagagaagaacacctacatttatagaggttcccccttttagtcctcactaaaggtatgtcctctcttcgtgatataaa 317  Q
    |||| |||||||||||||| || | ||||||||| | | ||||||| | ||||||| ||||  |||||  |||||||||||  |||||||||   | |||    
T  17051531 tgctgaaattaaaaggataagggaaagaagaacatc-agatttatatatgttccccattttcctcctcgttaaaggtatgttatctcttcgtagaagaaa 17051629  T
Q  318 acacctctatcacggtattccactatgatgaaaaatgtttacaagtgtaagattacaaagattcctttgattctctaatctt 399  Q
    || |||||   | ||  |||||||||| |||||| |||||||||| ||| ||||| ||||||||||| ||||| ||||||||    
T  17051630 acgcctcttctatgggcttccactatgttgaaaa-tgtttacaagggtatgattataaagattccttcgattc-ctaatctt 17051709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 177; Significance: 4e-95; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 17 - 394
Target Start/End: Original strand, 21486814 - 21487193
Alignment:
Q  17 cctattaacaataaatctcactaacatctaataaacatagggtatatgaagtaattgtttaaatttaactttcaactttaattgtgagaaaattgaatta 116  Q
    |||||||| |||||||  |||||||| ||||| |||| | |||||||||||||||||||| || |||||||| |||||| ||||||||||||||||||      
T  21486814 cctattaataataaataacactaacaactaatgaacacaaggtatatgaagtaattgtttgaagttaacttttaactttgattgtgagaaaattgaatcg 21486913  T
Q  117 gtaaaatctcaattaagaaaattgagattagattttggtaaattgtaaactcac--tcaaacaacgatcacttcacataatgaattcatatacacaaata 214  Q
    || |||||||||||||||||||||||||||| |||  |||||||||||| ||||  ||||| || |||||||||| | ||||||||||||||||||||||    
T  21486914 gtgaaatctcaattaagaaaattgagattaggtttcagtaaattgtaaattcacaatcaaataatgatcacttcatacaatgaattcatatacacaaata 21487013  T
Q  215 taatgctcaaattaaaaggatagggaagagaagaacacctacatttatagaggttcccccttttagtcctcactaaaggtatgtcctctcttcgtgatat 314  Q
     ||| || |||||||||||||| |||||||||||| ||  | ||||||| |||||| ||||||| |||||| |||  |||  | ||||||||| |||||     
T  21487014 gaatcctaaaattaaaaggatatggaagagaagaatacaaagatttataaaggttctcccttttcgtcctcgctaggggttcgccctctcttcatgatag 21487113  T
Q  315 aaaacacctctatcacggtattccactatgatgaaaaatgtttacaagtgtaagattacaaagattcctttgattctcta 394  Q
    ||||||||| ||||| ||| ||| |||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||    
T  21487114 aaaacacctttatcatggtcttctactatgatgaaaaatgtttacaagtgtatgattacaaagattccttggattttcta 21487193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 306 - 521
Target Start/End: Original strand, 14753210 - 14753425
Alignment:
Q  306 tcgtgatataaaacacctctatcacggtattccactatgatgaaaaatgtttacaagtgtaagattacaaagattcctttgattctctaatcttcatttc 405  Q
    |||||||| |||||| |  ||||||||| ||||||||||||||||||||||||||||| || ||||||||| |||| |||||||||| ||||||  ||      
T  14753210 tcgtgatagaaaacatcgttatcacggtcttccactatgatgaaaaatgtttacaagtctatgattacaaaaattcatttgattctccaatcttatttga 14753309  T
Q  406 taagaaatcacaccaaatccaatattcaaaacctcttgaaatttgacaaccacaagatcttcgaatttcaagcttccatgcaattctttgaacctcttct 505  Q
    |||| |||||||| | || |||| ||||| ||||||||| ||| |||| ||||||| ||||||||  ||||||||||||||||| |||||||| ||| ||    
T  14753310 taagcaatcacacaagattcaatcttcaagacctcttgatattggacacccacaaggtcttcgaacatcaagcttccatgcaatcctttgaacttctact 14753409  T
Q  506 ccaagaattcgtcttt 521  Q
    | ||||||||||||||    
T  14753410 ctaagaattcgtcttt 14753425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 148; Significance: 7e-78; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 18 - 492
Target Start/End: Complemental strand, 22724981 - 22724510
Alignment:
Q  18 ctattaacaataaatctcactaacatctaataaacatagggtatatgaagtaattgtttaaatttaactttcaactttaattgtgagaaaattgaattag 117  Q
    |||||| ||||||||| |||||||| ||| | |||| | ||||||||||| |||||||| || ||||||||||||||| |||||||||||||||||||      
T  22724981 ctattatcaataaatcacactaacaacta-tgaacacaaggtatatgaagcaattgtttgaagttaactttcaactttgattgtgagaaaattgaattga 22724883  T
Q  118 taaaatctcaattaagaaaattgagattagattttggtaaattgtaaactcac--tcaaacaacgatcacttcacataatgaattcatatacacaaatat 215  Q
    ||   |||||||| |  ||||||||||||| |||||| |||| || |||||||  ||||| || |||  ||||| | |||||||||||||||| || |||    
T  22724882 ta---tctcaattgatgaaattgagattaggttttggaaaatagtgaactcacaatcaaataatgattgcttcatacaatgaattcatatacataattat 22724786  T
Q  216 aatgctcaaattaaaaggatagggaagagaagaacacctacatttatagaggttcccccttttagtcctcactaaaggtatgtcctctcttcgtgatata 315  Q
    || ||| |||| |||||||| | |||||||| |||||||| |||||||||||||  || |||| ||||||||||  ||||  ||||||| || |||||||    
T  22724785 aa-gctgaaatcaaaaggattgtgaagagaataacacctagatttatagaggtttgccattttcgtcctcactaggggtacatcctctcatcttgatata 22724687  T
Q  316 aaacacctctatcacggtattccactatgatgaaaaatgtttacaagtgtaagattacaaagattcctttgattctctaatcttcatttctaagaaatca 415  Q
    |||   |||||||||||| ||||||| |||| ||||||||||||||||||| ||||||||||||||||| ||||| ||||||||   | ||||| |||||    
T  22724686 aaatgtctctatcacggtcttccactctgataaaaaatgtttacaagtgtatgattacaaagattccttcgattccctaatcttatatgctaaggaatca 22724587  T
Q  416 caccaaatccaatattcaaaacctcttgaaatttgacaaccacaagatcttcgaatttcaagcttccatgcaattct 492  Q
    ||| | ||||||| ||||| ||||| ||||||| ||||  || |||||||| ||   |||| | |||||||||||||    
T  22724586 cacaagatccaatcttcaagacctcatgaaattggacacgcataagatctttgatactcaaccgtccatgcaattct 22724510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 257 - 489
Target Start/End: Complemental strand, 22337497 - 22337266
Alignment:
Q  257 atttatagaggttcccccttttagtcctcactaaaggtatgtcctctcttcgtgatataaaacacctctatcacggtattccactatgatgaaaaatgtt 356  Q
    ||||||| |||||  ||||||| || || ||||  |||||||||||||||||||||| ||||   || ||||||||| ||||  | | ||||||| ||||    
T  22337497 atttataaaggttttccctttttgttcttactaggggtatgtcctctcttcgtgatagaaaaagtctttatcacggtcttcctttgtcatgaaaa-tgtt 22337399  T
Q  357 tacaagtgtaagattacaaagattcctttgattctctaatcttcatttctaagaaatcacaccaaatccaatattcaaaacctcttgaaatttgacaacc 456  Q
    |||||||||| ||||| ||||||||||||||||| || |||||   | ||||| ||| ||   | ||||||| |||||  |||| |||||||  ||| ||    
T  22337398 tacaagtgtatgattataaagattcctttgattccctcatcttttatgctaagcaattactaaagatccaatcttcaagtcctcatgaaattgaacagcc 22337299  T
Q  457 acaagatcttcgaatttcaagcttccatgcaat 489  Q
    ||||| ||||||||| |||||||||||||||||    
T  22337298 acaaggtcttcgaatctcaagcttccatgcaat 22337266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 257 - 489
Target Start/End: Complemental strand, 22267225 - 22266994
Alignment:
Q  257 atttatagaggttcccccttttagtcctcactaaaggtatgtcctctcttcgtgatataaaacacctctatcacggtattccactatgatgaaaaatgtt 356  Q
    ||||||| |||||  ||||||| || |||||||  | ||||||||||||| |||||| ||||   |||||||||||||||||  | | ||||||| ||||    
T  22267225 atttataaaggttttccctttttgttctcactagggatatgtcctctcttggtgatagaaaaagtctctatcacggtattcctttgtcatgaaaa-tgtt 22267127  T
Q  357 tacaagtgtaagattacaaagattcctttgattctctaatcttcatttctaagaaatcacaccaaatccaatattcaaaacctcttgaaatttgacaacc 456  Q
    | |||||||| ||||| ||||||||||||||||| || |||||   |  |||| ||| ||   | ||||||| |||||  |||||||||| |  |||  |    
T  22267126 ttcaagtgtatgattataaagattcctttgattccctcatcttttatgttaagcaattactaaagatccaatcttcaagtcctcttgaaactgaacagtc 22267027  T
Q  457 acaagatcttcgaatttcaagcttccatgcaat 489  Q
    ||||| ||||||||| |||||||||||||||||    
T  22267026 acaaggtcttcgaatctcaagcttccatgcaat 22266994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 390
Target Start/End: Original strand, 17795452 - 17795506
Alignment:
Q  335 ttccactatgatgaaaaatgtttacaagtgtaagattacaaagattcctttgattc 390  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||    
T  17795452 ttccactatgatgaaaa-tgtttacaagtgtatgattacaaagattccttcgattc 17795506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 285
Target Start/End: Original strand, 17795360 - 17795402
Alignment:
Q  243 agaagaacacctacatttatagaggttcccccttttagtcctc 285  Q
    ||||||||||| | |||||||||||||||||||||| ||||||    
T  17795360 agaagaacaccaagatttatagaggttcccccttttcgtcctc 17795402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 277
Target Start/End: Original strand, 23649421 - 23649471
Alignment:
Q  227 taaaaggatagggaagagaagaacacctacatttatagaggttcccccttt 277  Q
    |||||||||||||||||||||||||||   |||||||| ||||||| ||||    
T  23649421 taaaaggatagggaagagaagaacaccagaatttatagtggttccctcttt 23649471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 19 - 521
Target Start/End: Complemental strand, 23469917 - 23469417
Alignment:
Q  19 tattaacaataaatctcactaacatctaataaacatagggtatatgaagtaattgtttaaatttaactttcaactttaattgtgagaaaattgaattagt 118  Q
    ||||||||||||||| |||||||  | ||| |||||| |||||||||||||||||||  || |||| |||||||||| |||||||||||||| |||  ||    
T  23469917 tattaacaataaatcacactaacgacaaatgaacataaggtatatgaagtaattgttcgaagttaattttcaactttgattgtgagaaaattaaatctgt 23469818  T
Q  119 aaaatctcaattaagaaaattgagattagattttggtaaattgtaaactcac--tcaaacaacgatcacttcacataatgaattcatatacac--aaata 214  Q
    ||||||||||||||| | ||||||||||| ||||||||||  || |||||||  ||||  ||  |||||||||| ||||||||||||| ||||  |||||    
T  23469817 aaaatctcaattaaggatattgagattag-ttttggtaaaaagt-aactcacaatcaattaataatcacttcacgtaatgaattcataaacaccaaaata 23469720  T
Q  215 taatgctcaaattaaaaggatagggaagagaagaacacctacatttatagaggttcccccttttagtcctcactaaaggtatgtcctctcttcgtgatat 314  Q
    ||||| | ||||||||| |||| |  || |||||| ||| | ||||||||||||| ||||||||  |||||  ||   |||  || |||||  ||||||     
T  23469719 taatgttgaaattaaaaagataagagagtgaagaataccgagatttatagaggtttccccttttcatcctcgttatgagtacatcatctct--gtgatag 23469622  T
Q  315 aaaacacctctatcacggtattccactatgatgaaaaatgtttacaagtgtaagattacaaagattcctttgattctctaatcttcatttctaagaaatc 414  Q
    ||||   |||||||||||| |||| |||||||| ||||||| ||||||||||  ||||||||||||| || |||||  ||||||||  | ||||| ||||    
T  23469621 aaaa-tgctctatcacggtcttccgctatgatg-aaaatgtctacaagtgtataattacaaagattcattcgattcattaatcttctatgctaagcaatc 23469524  T
Q  415 acaccaaatccaatattcaaaacctcttgaaatttgacaaccacaagatcttcgaatttcaagcttccatgcaattctttgaacctcttctccaagaatt 514  Q
    ||||   ||||||| || || ||||||||||||  |||||||||| | ||||||||| |||||||| |||||||| |||| ||| ||| ||   ||||||    
T  23469523 acacacgatccaatctttaagacctcttgaaatcggacaaccacatggtcttcgaatctcaagctttcatgcaatcctttaaacttctactatgagaatt 23469424  T
Q  515 cgtcttt 521  Q
    |||||||    
T  23469423 cgtcttt 23469417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 17 - 473
Target Start/End: Complemental strand, 29799356 - 29798901
Alignment:
Q  17 cctattaacaataaatctcactaacatctaataaacatagggtatatgaagtaatt-gtttaaatttaactttcaactttaattgtgagaaaattgaatt 115  Q
    |||||||||||||||    ||||||| ||||| ||||    |||||||||| |||| |||| || || |||||||||||| ||||||| |||||||||||    
T  29799356 cctattaacaataaactatactaacaactaatgaacacgaagtatatgaagcaatttgtttgaagtttactttcaactttgattgtgataaaattgaatt 29799257  T
Q  116 agtaaaatctcaattaagaaaattgagattagattttggtaaattgtaaactcac--tcaaacaacgatcacttcacataatgaattcatatacacaaat 213  Q
       |||||||||||| |  |||||||  |||| |||||  |||| |||||||||   | ||   | | | ||||||||  ||||||||||     ||| |    
T  29799256 gagaaaatctcaattgatgaaattgatgttaggttttgtaaaatagtaaactcataattaacttatgctaacttcacactatgaattcatt----caatt 29799161  T
Q  214 ataatgctcaaa-ttaaaaggatagggaagagaagaacacctacatttatagaggttcccccttttagtcctcactaaaggtatgtcctctcttcgtgat 312  Q
    |||||||| ||| || |||||||| |||||| ||||||||| | |||||||||||||| || |||| |||||  |||  ||||  || ||| ||||||||    
T  29799160 ataatgctgaaagtttaaaggatatggaagataagaacaccgagatttatagaggttctccttttttgtcctg-ctaggggtacatcatcttttcgtgat 29799062  T
Q  313 ataaaacacctctatcacggtattccactatgatgaaaaatgtttacaagtgtaagattacaaagattcctttgattctctaatcttcatttctaagaaa 412  Q
    | ||||||||| ||||||||| |||||||||||| || |||||  |||| ||||  ||||||||||||| ||  |||||| |||||||  | ||||  ||    
T  29799061 agaaaacacctatatcacggtcttccactatgattaataatgtagacaaatgtataattacaaagattcattcaattctcaaatcttctatgctaaacaa 29798962  T
Q  413 tcacaccaaatccaatattcaaaacctcttgaaatttgacaaccacaagatcttcgaattt 473  Q
    |||||| | ||||||| ||||| ||||||||||||| |||| ||||||||| |||||||||    
T  29798961 tcacacaagatccaatcttcaagacctcttgaaattggacacccacaagatgttcgaattt 29798901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 29801407 - 29801309
Alignment:
Q  17 cctattaacaataaatctcactaacatctaataaacatagggtatatgaagtaattgtttaaatttaactttcaactttaattgtgagaaaattgaatt 115  Q
    |||||||| |||||||| |||||||| ||||| |||| | ||||||||||| | |||||| || || || || | |||| |||||||||||||||||||    
T  29801407 cctattaagaataaatcacactaacaactaatgaacacaaggtatatgaagaagttgtttgaagtttacgtttagctttgattgtgagaaaattgaatt 29801309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 277
Target Start/End: Complemental strand, 18371707 - 18371657
Alignment:
Q  227 taaaaggatagggaagagaagaacacctacatttatagaggttcccccttt 277  Q
    |||||||||| |||||||||||||||  | |||||||| ||||||||||||    
T  18371707 taaaaggatatggaagagaagaacactgagatttatagtggttcccccttt 18371657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 27878410 - 27878353
Alignment:
Q  228 aaaaggatagggaagagaagaacacctacatttatagaggttcccccttttagtcctc 285  Q
    ||||||||||||||||||||||||||    ||||||| || |||||||||| ||||||    
T  27878410 aaaaggatagggaagagaagaacaccagggtttatagtggctccccctttttgtcctc 27878353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 16722362 - 16722126
Alignment:
Q  17 cctattaacaataaatctcactaacatctaataaacatagggtatatgaagtaattgtttaaatttaactttcaactttaattgtgagaaaattgaatta 116  Q
    |||||||||||||||||  ||||| | ||||| |||| | |||||||||||||||||||| || ||||||||||||||| ||| |||||||||| |||      
T  16722362 cctattaacaataaatcatactaaaaactaatgaacacaaggtatatgaagtaattgtttgaagttaactttcaactttgattttgagaaaatttaatcg 16722263  T
Q  117 gtaaaatctcaattaagaaaattgagattagattttggtaaattgtaaactcac--tcaaacaacgatcacttcacataatgaattcatatacacaaata 214  Q
    ||||||| ||||||||||||||||||||| | |||| |||| ||||||||||||  |||||  | || |||||| || ||||| |||||||||||||||     
T  16722262 gtaaaatttcaattaagaaaattgagattgggtttttgtaacttgtaaactcacaatcaaatcatgaccacttctcacaatgatttcatatacacaaatt 16722163  T
Q  215 taatgctcaaattaaaaggatagggaagagaagaaca 251  Q
    ||||||| |||||||| ||||||||||| ||| ||||    
T  16722162 taatgctgaaattaaatggatagggaagtgaaaaaca 16722126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 241 - 489
Target Start/End: Original strand, 29388645 - 29388891
Alignment:
Q  241 agagaagaacacctacatttatagaggttcccccttttagtcctcactaaaggtatgtcctctcttcgtgatataaaacacctctatcacggtattccac 340  Q
    ||||||||||| | ||||||||||||||| |||||||| | ||||||||  ||||  ||||||||| |||||| ||||||| ||||||||||  ||||||    
T  29388645 agagaagaacatcaacatttatagaggtttccccttttcgacctcactaggggtacatcctctcttagtgataaaaaacacttctatcacgggcttccac 29388744  T
Q  341 tatgatgaaaaatgtttacaagtgtaagattacaaagattcctttgattctctaatcttcatttctaagaaatcacaccaaatccaatattcaaaacctc 440  Q
    ||||||| ||||||| ||||| |||| ||| |||||||||| || |||||  ||||||||  | ||||| |||||||| | ||||||| |||||   |||    
T  29388745 tatgatg-aaaatgtgtacaaatgtatgataacaaagattctttcgattc-ataatcttctatgctaagcaatcacacaagatccaatcttcaagttctc 29388842  T
Q  441 ttgaaatttgacaaccacaagatcttcgaatttcaagcttccatgcaat 489  Q
    |||||||| ||||  |||||| ||||||||| |  ||||| ||||||||    
T  29388843 ttgaaattagacagtcacaaggtcttcgaatctagagcttgcatgcaat 29388891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 17 - 361
Target Start/End: Complemental strand, 40545974 - 40545630
Alignment:
Q  17 cctattaacaataaatctcactaacatctaataaacatagggtatatgaagtaattgtttaaatttaactttcaactttaattgtgagaaaattgaatta 116  Q
    ||||||||||||||||| || | ||| |||||  ||| | ||||||||||  |||||||||||  | |||||||||||  ||||||||| ||||||||||    
T  40545974 cctattaacaataaatcacattgacagctaatggacacacggtatatgaatcaattgtttaaagcttactttcaacttcgattgtgagataattgaatta 40545875  T
Q  117 gtaaaatctcaattaagaaaattgagattagattttggtaaattgtaaactcac--tcaaacaacgatcacttcacataatgaattcatatacacaaata 214  Q
      | |||||||||| |   ||| |||||||| |  ||  |||| || || ||||  ||||| ||  |  |||||||| |||||||||| |||||  | ||    
T  40545874 aaagaatctcaattgaagtaatcgagattaggtaatgtaaaatagtgaaatcacaatcaaataaaaaaaacttcacacaatgaattcagataca--atta 40545777  T
Q  215 taatgctcaaattaaaaggatagggaagagaagaacacctacatttatagaggttcccccttttagtcctcac-taaaggtatgtcctctcttcgtgata 313  Q
    ||||||  |||||||||||||| |||||||||||||||  | |||||||||||||||||| |   |||||| | |   |||| ||||| |||||||||||    
T  40545776 taatgcaaaaattaaaaggatatggaagagaagaacactgagatttatagaggttccccc-tcccgtcctcgcttcggggtacgtcctttcttcgtgata 40545678  T
Q  314 taaaacacctctatcacggtattccactatgatgaaaaatgtttacaa 361  Q
     |||||  |||||||| ||| |||||||||||||||||||||||||||    
T  40545677 gaaaacgtctctatcatggttttccactatgatgaaaaatgtttacaa 40545630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 335 - 496
Target Start/End: Complemental strand, 18450631 - 18450472
Alignment:
Q  335 ttccactatgatgaaaaatgtttacaagtgtaagattacaaagattcctttgattctctaatcttcatttctaagaaatcacaccaaatccaatattcaa 434  Q
    ||||||||||||||||| | |||||||||||| ||||||||||||| ||| ||||| |||||||||  | ||||| |||||||| | ||||||| |||||    
T  18450631 ttccactatgatgaaaa-tatttacaagtgtatgattacaaagatttcttcgattc-ctaatcttctatgctaagcaatcacacaagatccaatcttcaa 18450534  T
Q  435 aacctcttgaaatttgacaaccacaagatcttcgaatttcaagcttccatgcaattctttga 496  Q
     | |||||||||||  ||| |||||||||||| |||| |||||||| |||||||| ||||||    
T  18450533 gaactcttgaaattacacagccacaagatctttgaatctcaagcttgcatgcaatcctttga 18450472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 349 - 521
Target Start/End: Original strand, 20685307 - 20685478
Alignment:
Q  349 aaaatgtttacaagtgtaagattacaaagattcctttgattctctaatcttcatttctaagaaatcacaccaaatccaatattcaaaacctcttgaaatt 448  Q
    |||||||||||||||||| || ||||||||||| || ||||| ||||| |||  | ||||| |||||||| | ||||||| |||||||||||||||| ||    
T  20685307 aaaatgtttacaagtgtatgaatacaaagattctttcgattc-ctaatgttctatgctaagcaatcacacaagatccaatcttcaaaacctcttgaattt 20685405  T
Q  449 tgacaaccacaagatcttcgaatttcaagcttccatgcaattctttgaacctcttctccaagaattcgtcttt 521  Q
     |||| ||| ||||||||||||  |||||||| |||||||| |||||||| ||| ||   |||||||||||||    
T  20685406 ggacagccataagatcttcgaacctcaagcttgcatgcaatcctttgaacttctactttgagaattcgtcttt 20685478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 335 - 380
Target Start/End: Original strand, 14755936 - 14755980
Alignment:
Q  335 ttccactatgatgaaaaatgtttacaagtgtaagattacaaagatt 380  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||    
T  14755936 ttccactatgatgaaaa-tgtttacaagtgtatgattacaaagatt 14755980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 434
Target Start/End: Complemental strand, 16722128 - 16722052
Alignment:
Q  358 acaagtgtaagattacaaagattcctttgattctctaatcttcatttctaagaaatcacaccaaatccaatattcaa 434  Q
    ||||||||| ||||||||||||||||| ||||  ||||| |||  | ||||| |||||||| | ||||||| |||||    
T  16722128 acaagtgtatgattacaaagattccttcgatttcctaattttctatgctaagcaatcacacaagatccaatcttcaa 16722052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 309
Target Start/End: Original strand, 20685216 - 20685268
Alignment:
Q  257 atttatagaggttcccccttttagtcctcactaaaggtatgtcctctcttcgt 309  Q
    |||||||||||||| |||||||  |||||||||  | ||||||||||||||||    
T  20685216 atttatagaggttctcccttttcttcctcactagggatatgtcctctcttcgt 20685268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 21585459 - 21585660
Alignment:
Q  17 cctattaacaataaatctcactaacatctaataaacatagggtatatgaagtaattgtttaaatttaactttcaactttaattgtgagaaaattgaatta 116  Q
    ||||||||||||||||| |||| ||| ||||  |||| | ||||||| |||||||||||| || |||| |||||||||| |||||||||||||| ||||     
T  21585459 cctattaacaataaatcacactcacaactaacgaacacaaggtatatcaagtaattgtttgaagttaa-tttcaactttgattgtgagaaaattaaattg 21585557  T
Q  117 gtaaaatctcaattaagaaaattgagattagattttggtaaattgtaaactcac--tcaaacaacgatcacttcacataatgaattcatatacacaaata 214  Q
       || |||| |||||||||||||||||||| ||||||||||||||||||||||  ||| | || |||||||||||| ||||||||||||||||||||||    
T  21585558 acgaagtctc-attaagaaaattgagattaggttttggtaaattgtaaactcacaatcatataatgatcacttcacacaatgaattcatatacacaaata 21585656  T
Q  215 taat 218  Q
    ||||    
T  21585657 taat 21585660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 305 - 519
Target Start/End: Complemental strand, 8835479 - 8835269
Alignment:
Q  305 ttcgtgatataaaacacctctatcacggtattccactatgatgaaaaatgtttacaagtgtaagattacaaagattcctttgattctctaatcttcattt 404  Q
    ||||||||| ||||   |||||||||||| || || |||||||||   |||||||||||||| | |||||||||||| ||||||||  |||| ||   |     
T  8835479 ttcgtgataaaaaatgtctctatcacggtctttcattatgatgaa---tgtttacaagtgtatggttacaaagattcatttgattccttaatatttcatg 8835383  T
Q  405 ctaagaaatcacaccaaatccaatattcaaaacctcttgaaatttgacaaccacaagatcttcgaatttcaagcttccatgcaattctttgaacctcttc 504  Q
     |||| |||||||| | ||||||| ||||| |  ||||||||||||| | | | ||| ||||  ||| |||||||||||||||||| ||| ||| ||| |    
T  8835382 ataagcaatcacacaagatccaatcttcaagagttcttgaaatttgaaagctataaggtctttaaatctcaagcttccatgcaatt-tttaaacttctac 8835284  T
Q  505 tccaagaattcgtct 519  Q
    | | |||||||||||    
T  8835283 ttcgagaattcgtct 8835269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 355 - 477
Target Start/End: Complemental strand, 16031037 - 16030912
Alignment:
Q  355 tttacaagtgtaagattacaaagattcctttgattctctaatcttcatttctaagaaatcac---accaaatccaatattcaaaacctcttgaaatttga 451  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||  | ||||||||||||   || ||||||||| ||||||  ||||| ||||| ||    
T  16031037 tttacaagtgtatgattacaaagattcctttgatt-tctaatcttctatgctaagaaatcacacaacaaaatccaatcttcaaactctcttaaaattgga 16030939  T
Q  452 caa-ccacaagatcttcgaatttcaag 477  Q
     || ||||||| ||||| ||| |||||    
T  16030938 taatccacaaggtcttcaaatctcaag 16030912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 4007162 - 4007114
Alignment:
Q  335 ttccactatgatgaaaaatgtttacaagtgtaagattacaaagattcctt 384  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  4007162 ttccactatgatgaaaa-tgtttacaagtgtatgattacaaagattcctt 4007114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 4012554 - 4012506
Alignment:
Q  335 ttccactatgatgaaaaatgtttacaagtgtaagattacaaagattcctt 384  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  4012554 ttccactatgatgaaaa-tgtttacaagtgtatgattacaaagattcctt 4012506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 418
Target Start/End: Complemental strand, 16177598 - 16177514
Alignment:
Q  335 ttccactatgatgaaaaatgtttacaagtgtaagattacaaa-gattcctttgattctctaatcttcatttctaagaaatcacac 418  Q
    ||||||||||||||||||||  |||||   || ||||||||| |||||| | |||||||||||||||| | ||||| ||||||||    
T  16177598 ttccactatgatgaaaaatggatacaatgttatgattacaaaagattccatcgattctctaatcttcaatcctaagcaatcacac 16177514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 390
Target Start/End: Original strand, 14616345 - 14616386
Alignment:
Q  349 aaaatgtttacaagtgtaagattacaaagattcctttgattc 390  Q
    ||||||||||||||||||  |||||||||| |||||||||||    
T  14616345 aaaatgtttacaagtgtataattacaaagactcctttgattc 14616386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 257 - 521
Target Start/End: Original strand, 18618462 - 18618722
Alignment:
Q  257 atttatagaggttcccccttttagtcctcactaaaggtatgtcctctcttcgtgatataaaacacctctatcacggtattccactatgatgaaaaatgtt 356  Q
    ||||||| |||||||||||||| |||||| |||  |||| ||  ||||||||||||| ||||  ||| ||||||||  || |||||||||||||| ||||    
T  18618462 atttatacaggttcccccttttcgtcctcgctacgggtacgt--tctcttcgtgatagaaaatgcctatatcacgggctttcactatgatgaaaa-tgtt 18618558  T
Q  357 tacaagtgtaagattacaaagattcctttgattctctaatcttcatttctaagaaatcacaccaaatccaatattcaaaacctcttgaaatttgacaacc 456  Q
    ||||| | || |||| ||||||||| |||||||| |||||||||  | ||||| ||||| |  ||||||||| || || ||||||||||||| |||| ||    
T  18618559 tacaaatatatgattgcaaagattcttttgattc-ctaatcttctatgctaagcaatcagaataaatccaatctttaagacctcttgaaattggacagcc 18618657  T
Q  457 acaagatcttcgaatttcaagcttccatgcaattctttgaacctcttctccaagaattcgtcttt 521  Q
    ||||| |||| |||| |||||||| |||||||| | || ||| ||| |||  |||||||||||||    
T  18618658 acaaggtctttgaatctcaagcttgcatgcaatcccttaaacttctactctgagaattcgtcttt 18618722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 349 - 521
Target Start/End: Original strand, 20309776 - 20309947
Alignment:
Q  349 aaaatgtttacaagtgtaagattacaaagattcctttgattctctaatcttcatttctaagaaatcacaccaaatccaatattcaaaacctcttgaaatt 448  Q
    |||||||||||||||||| ||||||||||||| ||| ||||| ||||| |||  | ||||| |||  ||| | ||||||| ||||| |||||||||||||    
T  20309776 aaaatgtttacaagtgtatgattacaaagattacttcgattc-ctaattttctatgctaagcaatggcacaagatccaatcttcaagacctcttgaaatt 20309874  T
Q  449 tgacaaccacaagatcttcgaatttcaagcttccatgcaattctttgaacctcttctccaagaattcgtcttt 521  Q
     |||||||| ||| ||||| ||| ||||| || |||| ||| |||||| | | | ||||||||| ||||||||    
T  20309875 ggacaaccataaggtcttcaaatctcaagattgcatgaaatcctttgatcttttactccaagaaatcgtcttt 20309947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 269
Target Start/End: Original strand, 5505981 - 5506233
Alignment:
Q  19 tattaacaataaatctcactaacatctaataaacatagggtatatgaagtaattgtttaaatttaactttcaactttaattgtgagaaaattgaattagt 118  Q
    ||||||||| ||| | |||||||| |||||||||||| ||||||||||  ||||| || || || |||||||||||  |||||||  ||||||||||       
T  5505981 tattaacaacaaagcacactaacaactaataaacataaggtatatgaaacaattgcttgaagttcactttcaacttggattgtgattaaattgaattgag 5506080  T
Q  119 aaaatctcaattaagaaaattgagattagattttggtaaattgtaaactcac--tcaaacaacgatcacttcacataatgaattcatatacacaaatata 216  Q
    ||||| |||||| || ||||||||||||| |||| | || | || |||||||  ||||| || || || |||| | |||  | |||||| ||| | ||||    
T  5506081 aaaatatcaattgaggaaattgagattaggtttttgaaattagttaactcacaatcaaataatgaacaattcatacaatcgaatcatatgcacgattata 5506180  T
Q  217 atgctcaaattaaaaggatagggaagagaagaacacctacatttatagaggtt 269  Q
    ||||  || ||||||| |||||||||| |||||||   | |||||||||||||    
T  5506181 atgcagaacttaaaagtatagggaagataagaacattgagatttatagaggtt 5506233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 489
Target Start/End: Complemental strand, 20572760 - 20572601
Alignment:
Q  329 acggtattccactatgatgaaaaatgtttacaagtgtaagattacaaagattcctttgattctctaatcttcatttctaagaaatcacaccaaatccaat 428  Q
    |||| |||||||||||||||||| |||||||| |||||  |||||||||| ||||| ||   | |||| |||  ||||||||||| |||| | |||||||    
T  20572760 acgggattccactatgatgaaaa-tgtttacaggtgtattattacaaagaatccttcgaaattataatattctattctaagaaattacactagatccaat 20572662  T
Q  429 attcaaaacctcttgaaatttgacaaccacaagatcttcgaatttcaagcttccatgcaat 489  Q
     |||||  ||||||||| |  |||| ||||||| ||||| ||||||||||||  |||||||    
T  20572661 cttcaaggcctcttgaagtcagacagccacaaggtcttcaaatttcaagcttgtatgcaat 20572601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 448
Target Start/End: Complemental strand, 45080361 - 45080249
Alignment:
Q  335 ttccactatgatgaaaaatgtttacaagtgtaagattacaaagattcctttgattctctaatcttcatttctaagaaatcacaccaaatccaatattcaa 434  Q
    |||||||||||||||||||||||| || | |  ||||||||||||| ||||||||| ||||| |||  | ||||| |||||||| |  |||||| |||||    
T  45080361 ttccactatgatgaaaaatgtttaaaaatatgtgattacaaagatttctttgattc-ctaattttctatgctaagcaatcacactaggtccaatcttcaa 45080263  T
Q  435 aacctcttgaaatt 448  Q
     | |||||||||||    
T  45080262 gatctcttgaaatt 45080249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 490
Target Start/End: Complemental strand, 2767819 - 2767591
Alignment:
Q  260 tatagaggttcccccttttagtcctcactaaaggtatgtcctctcttcgtgatataaaacacctctatcacggtattccactatgatgaaaaatgtttac 359  Q
    ||||||||||||||||||| |||||| |||| |||| ||| |||||||||   | |||||  || |   || | |||||||||||||||    | |||||    
T  2767819 tatagaggttccccctttttgtcctcgctaagggtacgtcatctcttcgtagaagaaaacttctattctacagaattccactatgatgattttt-tttac 2767721  T
Q  360 aagtgtaagattacaaagattcctttgattctctaatcttcatttctaagaaatcacaccaaatccaatattcaaaacctcttgaaatttgacaaccaca 459  Q
    |||  || |||||||||||||| ||  ||| ||||||||||  | ||| | ||| |||| | ||| ||| |||||   |||||||||| | ||| |||||    
T  2767720 aagattatgattacaaagattctttatatt-tctaatcttctatgctaggcaataacactagatctaatcttcaagctctcttgaaatctaacagccaca 2767622  T
Q  460 agatcttcgaatttcaagcttccatgcaatt 490  Q
    || |||||||||||||||||| |||||||||    
T  2767621 aggtcttcgaatttcaagcttgcatgcaatt 2767591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 360
Target Start/End: Original strand, 17504602 - 17504707
Alignment:
Q  257 atttatagaggttcccccttttagtcctcactaaaggtatgtcctctcttcgtgatataaaacacctctatcacggtattccactatgat--gaaaaatg 354  Q
    ||||||||||| || |  |||| || |||| || ||||||||| ||||||| ||||| |||||  |||||||||||| ||||||||| ||  ||||||||    
T  17504602 atttatagagggtcactttttttgttctcattagaggtatgtcatctcttcatgatagaaaacgtctctatcacggtcttccactataattagaaaaatg 17504701  T
Q  355 tttaca 360  Q
    ||||||    
T  17504702 tttaca 17504707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 361
Target Start/End: Complemental strand, 17278755 - 17278692
Alignment:
Q  298 tcctctcttcgtgatataaaacacctctatcacggtattccactatgatgaaaaatgtttacaa 361  Q
    |||||||||||||||| ||||   ||||  |||||| || ||||||||||||||||||||||||    
T  17278755 tcctctcttcgtgatagaaaatgtctctgacacggtctttcactatgatgaaaaatgtttacaa 17278692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 309
Target Start/End: Complemental strand, 2758214 - 2758148
Alignment:
Q  243 agaagaacacctacatttatagaggttcccccttttagtcctcactaaaggtatgtcctctcttcgt 309  Q
    ||||||||||| |  |||||||||||| ||| |||| | |||||||| ||||| |||||||||||||    
T  2758214 agaagaacaccgaggtttatagaggtttccctttttcgacctcactagaggtacgtcctctcttcgt 2758148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 257 - 521
Target Start/End: Complemental strand, 64385 - 64123
Alignment:
Q  257 atttatagaggttcccccttttagtcctcactaaaggtatgtcctctcttcgtgatataaaacacctctatcacggtattccactatgatgaaaaatgtt 356  Q
    |||||||||||||||||||||| |||||| |||  ||||| || ||||||||||||| |||||   ||||   | |  ||| ||||||||||||| ||||    
T  64385 atttatagaggttcccccttttcgtcctcgctaggggtatatcatctcttcgtgatagaaaacgtttctacagctggcttcgactatgatgaaaa-tgtt 64287  T
Q  357 tacaagtgtaagattacaaagattcctttgattctctaatcttcatttctaagaaatcacaccaaatccaatattcaaaacctcttgaaatttgacaacc 456  Q
    |||||||||| |||||||||||||||||||| |||| |||||||  | ||||||| |||||| | | | |||  ||||  |||||| || || |||| ||    
T  64286 tacaagtgtatgattacaaagattcctttgaatctc-aatcttctatactaagaattcacacaagaacaaatcctcaaggcctcttaaatttggacagcc 64188  T
Q  457 acaagatcttcgaatttcaagcttccatgcaattctttgaacctcttctccaagaattcgtcttt 521  Q
    ||||| ||||||||| |||||||| |||||||  | |||||| ||| ||| ||||||||||||||    
T  64187 acaaggtcttcgaatctcaagcttgcatgcaacccgttgaacttctactctaagaattcgtcttt 64123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 257 - 521
Target Start/End: Original strand, 65982 - 66244
Alignment:
Q  257 atttatagaggttcccccttttagtcctcactaaaggtatgtcctctcttcgtgatataaaacacctctatcacggtattccactatgatgaaaaatgtt 356  Q
    |||||||||||||||||||||| |||||| |||  ||||| || ||||||||||||| |||||   ||||   | |  ||| ||||||||||||| ||||    
T  65982 atttatagaggttcccccttttcgtcctcgctaggggtatatcatctcttcgtgatagaaaacgtttctacagctggcttcgactatgatgaaaa-tgtt 66080  T
Q  357 tacaagtgtaagattacaaagattcctttgattctctaatcttcatttctaagaaatcacaccaaatccaatattcaaaacctcttgaaatttgacaacc 456  Q
    |||||||||| |||||||||||||||||||| |||| |||||||  | ||||||| |||||| | | | |||  ||||  |||||| || || |||| ||    
T  66081 tacaagtgtatgattacaaagattcctttgaatctc-aatcttctatactaagaattcacacaagaacaaatcctcaaggcctcttaaatttggacagcc 66179  T
Q  457 acaagatcttcgaatttcaagcttccatgcaattctttgaacctcttctccaagaattcgtcttt 521  Q
    ||||| ||||||||| |||||||| |||||||  | |||||| ||| ||| ||||||||||||||    
T  66180 acaaggtcttcgaatctcaagcttgcatgcaacccgttgaacttctactctaagaattcgtcttt 66244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 335 - 494
Target Start/End: Original strand, 12728 - 12885
Alignment:
Q  335 ttccactatgatgaaaaatgtttacaagtgtaagattacaaagattcctttgattctctaatcttcatttctaagaaatcacaccaaatccaatattcaa 434  Q
    |||||||| |||||||| |||||||||| ||| ||||||||||||||||| ||||| | |||||||  | ||||| |||||||| | ||||||| |||||    
T  12728 ttccactacgatgaaaa-tgtttacaagcgtatgattacaaagattccttcgattcac-aatcttctatactaagtaatcacacaagatccaatcttcaa 12825  T
Q  435 aacctcttgaaatttgacaaccacaagatcttcgaatttcaagcttccatgcaattcttt 494  Q
     |||||||||| || |||| ||||||||||||||||| ||||| || |||||||| ||||    
T  12826 gacctcttgaatttagacagccacaagatcttcgaatctcaagtttgcatgcaatccttt 12885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 335 - 494
Target Start/End: Original strand, 19786 - 19943
Alignment:
Q  335 ttccactatgatgaaaaatgtttacaagtgtaagattacaaagattcctttgattctctaatcttcatttctaagaaatcacaccaaatccaatattcaa 434  Q
    |||||||| |||||||| |||||||||| ||| ||||||||||||||||| ||||| | |||||||  | ||||| |||||||| | ||||||| |||||    
T  19786 ttccactacgatgaaaa-tgtttacaagcgtatgattacaaagattccttcgattcac-aatcttctatactaagtaatcacacaagatccaatcttcaa 19883  T
Q  435 aacctcttgaaatttgacaaccacaagatcttcgaatttcaagcttccatgcaattcttt 494  Q
     |||||||||| || |||| |||||||||||| |||| ||||| || |||||||| ||||    
T  19884 gacctcttgaatttagacagccacaagatcttagaatctcaagtttgcatgcaatccttt 19943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 349 - 522
Target Start/End: Original strand, 52937 - 53109
Alignment:
Q  349 aaaatgtttacaagtgtaagattacaaagattcctttgattctctaatcttcatttctaagaaatcacaccaaatccaatattcaaaacctcttgaaatt 448  Q
    |||||||||||||||||| ||||| ||| ||||| ||||||  ||||||||   | |||||||||||||| | ||||||| |||| ||||||| ||||||    
T  52937 aaaatgtttacaagtgtatgattataaaaattcccttgatta-ctaatcttttatgctaagaaatcacacaatatccaatcttcacaacctctggaaatt 53035  T
Q  449 tgacaaccacaagatcttcgaatttcaagcttccatgcaattctttgaacctcttctccaagaattcgtctttt 522  Q
     |||||||||||| ||||||||| | |||||| |||||||| |||||| | ||| |||  |||| |||||||||    
T  53036 ggacaaccacaaggtcttcgaatcttaagcttgcatgcaatcctttgatcttctgctctgagaaatcgtctttt 53109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 335 - 489
Target Start/End: Original strand, 23909710 - 23909864
Alignment:
Q  335 ttccactatgat-gaaaaatgtttacaagtgtaagattacaaagattcctttgattctctaatcttcatttctaagaaatcacaccaaatccaatattca 433  Q
    |||||||||||| | ||| | ||||||| || | ||||||||||||||||| ||||||| |||||||  | ||||| |||||||| | || |||| ||||    
T  23909710 ttccactatgataggaaattttttacaaatgcatgattacaaagattccttggattctc-aatcttctatgctaagcaatcacacaagattcaatcttca 23909808  T
Q  434 aaacctcttgaaatttgacaaccacaagatcttcgaatttcaagcttccatgcaat 489  Q
    | ||||||| ||||| |||||||||| |||||| |||| |||||||| ||||||||    
T  23909809 agacctcttaaaattggacaaccacatgatctttgaatctcaagcttgcatgcaat 23909864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 384
Target Start/End: Complemental strand, 21942661 - 21942626
Alignment:
Q  349 aaaatgtttacaagtgtaagattacaaagattcctt 384  Q
    |||||||||||||||||| |||||||||||||||||    
T  21942661 aaaatgtttacaagtgtaggattacaaagattcctt 21942626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 390
Target Start/End: Complemental strand, 17713868 - 17713827
Alignment:
Q  349 aaaatgtttacaagtgtaagattacaaagattcctttgattc 390  Q
    ||||||||||||||||||  |||||||||| |||||||||||    
T  17713868 aaaatgtttacaagtgtataattacaaagactcctttgattc 17713827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 384
Target Start/End: Original strand, 16510229 - 16510280
Alignment:
Q  335 ttccactatgatga--aaaatgtttacaagtgtaagattacaaagattcctt 384  Q
    |||||||||||||   ||||| |||||||||||| |||||||||||||||||    
T  16510229 ttccactatgatgttgaaaatatttacaagtgtatgattacaaagattcctt 16510280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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