View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_133 (Length: 348)
Name: NF10481A_low_133
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_133 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 24244996 - 24244856
Alignment:
| Q |
1 |
agataggcgctttctcgtgttccatttgcttcatgcctataaaaacaaataaaccattcagaaaagtcatctcctaggaacatttaaaattatgtatcag |
100 |
Q |
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| T |
24244996 |
agataggcgctttctcgtgttccatttgcttcatgcctataaaaacaaataaaccattcagaaaagtcatctcctaggaacatttaaaattatgtatcag |
24244897 |
T |
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| Q |
101 |
atggagacacaatcaaaggtttggtgaattgtgcacatttg |
141 |
Q |
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| T |
24244896 |
atggagacacaatcaaaggtttggtgaattgtgcacatttg |
24244856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 205 - 343
Target Start/End: Complemental strand, 24244792 - 24244654
Alignment:
| Q |
205 |
gacatttaagtcaatacaggtaggttaagcacaaacttgaatacctcaaaattcaaattgaagaaatgtacatacaataaacataaaattccaaggttta |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24244792 |
gacatttaagtcaatacaggtaggttaagcacaaacttgaatacctccaaattcaaattgaagaaatgtacatacaataaacataaaattccaaggttta |
24244693 |
T |
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| Q |
305 |
ttaatttattgtcacagttgataaagtaaagaaaaacat |
343 |
Q |
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| T |
24244692 |
ttaatttattgtcacagttggtaaagtaaagaaaaacat |
24244654 |
T |
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