View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_137 (Length: 346)
Name: NF10481A_low_137
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_137 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 7 - 346
Target Start/End: Complemental strand, 11732223 - 11731884
Alignment:
| Q |
7 |
cttgctggccacgaaaagtgacaatgtttgtaaggaagtgagtttatctatcccggttggcctgtgagttagatccaagcaaccctcaatgttaagatgg |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11732223 |
cttgctggccacgaaaagtgacaatgtttgtaaggaagtgagtttatctatcccggttggcatgtgagttagatccaagcaaccctcaatgttaagatgg |
11732124 |
T |
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| Q |
107 |
ctgaggcgagtcagatccttcaagtcttttggcaattccttgaggacatgacagtaggagagtttcaaggtttgcaaatggataagctttgtgatgcaac |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11732123 |
ctgaggcgagtcagatccttcaagtcttttggcaattccttgaggacatgacagtaggagagtttcaaggtttgcaaatggataagctttgtgatgcaac |
11732024 |
T |
|
| Q |
207 |
taggaagcttctctatgttgttgtgggatagatctagaaacctcaagtatttcatctcctcaatagaggttggtacaatcttgatccccaagtcatgtag |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11732023 |
taggaagcttctctatgttgttgtgggatagatctagaaacctcaagtatttcatctcctcaatagaggttggtacaatcttgatccccaagtcatgtag |
11731924 |
T |
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| Q |
307 |
atccaacacgtgcatggacttgaaggtgttgaagatctta |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
11731923 |
atccaacacgtgcatggacttgaaggtgttgaagatctta |
11731884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 7 - 346
Target Start/End: Original strand, 11901979 - 11902318
Alignment:
| Q |
7 |
cttgctggccacgaaaagtgacaatgtttgtaaggaagtgagtttatctatcccggttggcctgtgagttagatccaagcaaccctcaatgttaagatgg |
106 |
Q |
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| T |
11901979 |
cttgctggccacaaagagtgacaatgtttgtaaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatgg |
11902078 |
T |
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| Q |
107 |
ctgaggcgagtcagatccttcaagtcttttggcaattccttgaggacatgacagtaggagagtttcaaggtttgcaaatggataagctttgtgatgcaac |
206 |
Q |
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| T |
11902079 |
ttgaggcaactcaggccatccaagtcttttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagcttagtgatggaac |
11902178 |
T |
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| Q |
207 |
taggaagcttctctatgttgttgtgggatagatctagaaacctcaagtatttcatctcctcaatagaggttggtacaatcttgatccccaagtcatgtag |
306 |
Q |
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|||| ||||| ||||||||||| || || ||||||||| |||||||||| |||| |||||||||||| ||||| || ||||| ||||||||||||||||| |
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| T |
11902179 |
taggtagcttttctatgttgttatgagaaagatctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaatccccaagtcatgtag |
11902278 |
T |
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| Q |
307 |
atccaacacgtgcatggacttgaaggtgttgaagatctta |
346 |
Q |
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| T |
11902279 |
atccagcacacgtagggacttgaaggtgttgaagatctta |
11902318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 7 - 316
Target Start/End: Complemental strand, 11860578 - 11860269
Alignment:
| Q |
7 |
cttgctggccacgaaaagtgacaatgtttgtaaggaagtgagtttatctatcccggttggcctgtgagttagatccaagcaaccctcaatgttaagatgg |
106 |
Q |
| |
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||||||||| |||||||||||||||||||| || ||||| || |||| |||||| ||||| | ||||||||||||||||| ||||| | || |||||| |
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| T |
11860578 |
cttgctggctacgaaaagtgacaatgtttgcaaagaagtaagcttatttatcccacttggcatttgagttagatccaagcatccctctaagtcaagatga |
11860479 |
T |
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| Q |
107 |
ctgaggcgagtcagatccttcaagtcttttggcaattccttgaggacatgacagtaggagagtttcaaggtttgcaaatggataagctttgtgatgcaac |
206 |
Q |
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|||||| | ||| ||| | || |||||||||||||||||||||||||||||| | || |||||||| |||||||| |||||||| ||||| ||||||| |
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| T |
11860478 |
ttgaggcaactcaaatcgtccatgtcttttggcaattccttgaggacatgacattgagacagtttcaatgtttgcaagtggataagatttgttatgcaac |
11860379 |
T |
|
| Q |
207 |
taggaagcttctctatgttgttgtgggatagatctagaaacctcaagtatttcatctcctcaatagaggttggtacaatcttgatccccaagtcatgtag |
306 |
Q |
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|||||||||||||||||||||| ||||| ||||||||| |||||||||| |||| |||||||||||| | || || ||||||||||||| |||||||| |
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| T |
11860378 |
taggaagcttctctatgttgttatgggaaagatctagatacctcaagtacttcacatcctcaatagagctcggaaccgtcttgatccccaaatcatgtag |
11860279 |
T |
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| Q |
307 |
atccaacacg |
316 |
Q |
| |
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|||||||||| |
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| T |
11860278 |
atccaacacg |
11860269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 23 - 346
Target Start/End: Complemental strand, 12039327 - 12039004
Alignment:
| Q |
23 |
agtgacaatgtttgtaaggaagtgagtttatctatcccggttggcctgtgagttagatccaagcaaccctcaatgttaagatggctgaggcgagtcagat |
122 |
Q |
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||||||||||||||||| |||||||| |||| |||||| ||||| | ||||||||||||||||| ||||| | || ||||||| |||||| | ||| || |
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| T |
12039327 |
agtgacaatgtttgtaaagaagtgagcttatttatcccacttggcatttgagttagatccaagcatccctctaagtcaagatggttgaggcaactcaaat |
12039228 |
T |
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| Q |
123 |
ccttcaagtcttttggcaattccttgaggacatgacagtaggagagtttcaaggtttgcaaatggataagctttgtgatgcaactaggaagcttctctat |
222 |
Q |
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| | || ||||||||||||||||||||| | |||||| | || |||||||| |||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
12039227 |
catccatgtcttttggcaattccttgagaaaatgacattgagaaagtttcaacgtttgcaagtggataagagttgtgatgcaactaggaagcttctctat |
12039128 |
T |
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| Q |
223 |
gttgttgtgggatagatctagaaacctcaagtatttcatctcctcaatagaggttggtacaatcttgatccccaagtcatgtagatccaacacgtgcatg |
322 |
Q |
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|||||| || || ||||||||| |||||||||| |||| ||| ||||||||| | || | ||||||||||||||||||| | ||| |||||| |||| |
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| T |
12039127 |
gttgttatgagaaagatctagatacctcaagtacttcacctcttcaatagagctcggaatcgtcttgatccccaagtcatgcatatctaacacgcgcata |
12039028 |
T |
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| Q |
323 |
gacttgaaggtgttgaagatctta |
346 |
Q |
| |
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| ||||||||||| ||||||||| |
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| T |
12039027 |
gctttgaaggtgttaaagatctta |
12039004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 7 - 316
Target Start/End: Complemental strand, 11828443 - 11828134
Alignment:
| Q |
7 |
cttgctggccacgaaaagtgacaatgtttgtaaggaagtgagtttatctatcccggttggcctgtgagttagatccaagcaaccctcaatgttaagatgg |
106 |
Q |
| |
|
||||||||| |||||||||||||||||||| || |||||||| ||| ||| || ||||| | ||||||||||||||||| || || | || ||||||| |
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| T |
11828443 |
cttgctggctacgaaaagtgacaatgtttgcaaagaagtgagcttacttattccacttggcatttgagttagatccaagcatccatctaagtcaagatgg |
11828344 |
T |
|
| Q |
107 |
ctgaggcgagtcagatccttcaagtcttttggcaattccttgaggacatgacagtaggagagtttcaaggtttgcaaatggataagctttgtgatgcaac |
206 |
Q |
| |
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| |||| | ||| ||| | || ||||||||||||||| |||||||||||||| || |||||||| |||||||| |||||||| ||||| ||||||| |
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| T |
11828343 |
ttaaggcaactcaaatcatccatgtcttttggcaattctttgaggacatgacatcgagacagtttcaacgtttgcaagtggataagatttgttatgcaac |
11828244 |
T |
|
| Q |
207 |
taggaagcttctctatgttgttgtgggatagatctagaaacctcaagtatttcatctcctcaatagaggttggtacaatcttgatccccaagtcatgtag |
306 |
Q |
| |
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||||||||||||| |||||||| || || ||||||||| |||||||||| |||| |||||||||||| |||| || |||||||||||||||||||||| |
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| T |
11828243 |
taggaagcttctccatgttgttatgtgaaagatctagatacctcaagtacttcacatcctcaatagagcttggaactgtcttgatccccaagtcatgtag |
11828144 |
T |
|
| Q |
307 |
atccaacacg |
316 |
Q |
| |
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|||||||||| |
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|
| T |
11828143 |
atccaacacg |
11828134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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