View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_140 (Length: 342)

Name: NF10481A_low_140
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_140
NF10481A_low_140
[»] chr6 (26 HSPs)
chr6 (7-342)||(4564413-4564748)
chr6 (78-342)||(4592933-4593199)
chr6 (103-338)||(4617728-4617963)
chr6 (103-329)||(4602504-4602730)
chr6 (103-180)||(4506718-4506795)
chr6 (103-185)||(3172597-3172679)
chr6 (103-332)||(4517030-4517259)
chr6 (103-191)||(4481543-4481631)
chr6 (103-180)||(4514315-4514392)
chr6 (103-175)||(4489555-4489627)
chr6 (103-176)||(4461988-4462061)
chr6 (103-192)||(4470652-4470741)
chr6 (101-192)||(4557974-4558065)
chr6 (105-192)||(4586485-4586572)
chr6 (101-183)||(4571830-4571912)
chr6 (107-192)||(4561353-4561438)
chr6 (107-192)||(4575157-4575242)
chr6 (104-140)||(4266358-4266394)
chr6 (283-334)||(4299195-4299246)
chr6 (101-192)||(4612910-4613001)
chr6 (103-180)||(4484033-4484111)
chr6 (101-167)||(4580915-4580981)
chr6 (283-332)||(4568753-4568802)
chr6 (109-181)||(4259354-4259426)
chr6 (302-342)||(4266559-4266599)
chr6 (127-183)||(4599028-4599084)
[»] scaffold0199 (1 HSPs)
scaffold0199 (103-325)||(183-405)
[»] chr8 (4 HSPs)
chr8 (103-325)||(1674946-1675168)
chr8 (103-171)||(20863037-20863105)
chr8 (283-334)||(20863217-20863268)
chr8 (105-167)||(16685482-16685544)
[»] chr3 (1 HSPs)
chr3 (108-341)||(1281817-1282050)
[»] scaffold0288 (1 HSPs)
scaffold0288 (109-342)||(2918-3151)
[»] chr5 (2 HSPs)
chr5 (105-140)||(24103903-24103938)
chr5 (302-342)||(24103698-24103738)


Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 7 - 342
Target Start/End: Complemental strand, 4564748 - 4564413
Alignment:
Q  7 ataataccttattatatatgtatgtttttgtcgaaaacaaaatactcatgtattgacggatgtatgtataaccttcaagatattaactgatacttttgat 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||    
T  4564748 ataataccttattatatatgtatgtttttgtcgaaaacaaaatactcatgtatgtacggatgtatgtataaccttcaagatattaactgatacatttgat 4564649  T
Q  107 atgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggatatctttgacagtat 206  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4564648 atgcagatcagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcggttaaaggatatctttgacagtat 4564549  T
Q  207 caggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggagactctacaattgttttgaatactttcaatgaa 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  4564548 caggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcttggagactctacaattgttttgaatactttccatgaa 4564449  T
Q  307 cttgagagtgatgtaataaatgctctctcctctatg 342  Q
    ||| ||||||||||||||||||||||||||||||||    
T  4564448 ctttagagtgatgtaataaatgctctctcctctatg 4564413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 78 - 342
Target Start/End: Complemental strand, 4593199 - 4592933
Alignment:
Q  78 ccttcaagatattaact--gatacttttgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaa 175  Q
    |||||||| ||||||||  | ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4593199 ccttcaagctattaactttgctacttttgatatgcagatgagagttatctaacaaatggatatttggaaactaaagtagattggattccaggtttgaaaa 4593100  T
Q  176 actttcgattaaaggatatctttgacagtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggaga 275  Q
    ||||||| || ||||| ||   ||||  |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| || |  | |    
T  4593099 actttcggttgaaggacattgctgactatatcaggacaacagatccaaatgatattatgttaaactttgtaattgatgtggctgataaagatcataaaaa 4593000  T
Q  276 ctctacaattgttttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctctatg 342  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4592999 ctctactattattttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctctatg 4592933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 103 - 338
Target Start/End: Complemental strand, 4617963 - 4617728
Alignment:
Q  103 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggatatctttgaca 202  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||| || ||||| ||| |||||     
T  4617963 tgatatgcagatgagagttatctaacaaatggatgtttggaaactaaagtagattggattcccggtttgaaaaactttcggttgaaggacatcgttgact 4617864  T
Q  203 gtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggagactctacaattgttttgaatactttcaa 302  Q
     ||||||||||||| |||||||||||||||||||||| ||  | || || |  || |||  ||||     |||| |||| ||| ||||||||||||||||    
T  4617863 ttatcaggacaacaaatccaaatgatattatgttagaattctttatagaagttgcagatcgagttaacaaagacactactattcttttgaatactttcaa 4617764  T
Q  303 tgaacttgagagtgatgtaataaatgctctctcctc 338  Q
    ||||||||||||||||||||||||||||||||||||    
T  4617763 tgaacttgagagtgatgtaataaatgctctctcctc 4617728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 103 - 329
Target Start/End: Complemental strand, 4602730 - 4602504
Alignment:
Q  103 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggatatctttgaca 202  Q
    |||||||||||||| || |||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||| || ||||| ||  |||||     
T  4602730 tgatatgcagatgatagttatctaacaaatggatgtttggaaacaaaagtagattggattccaggtttgaaaaactttcggttgaaggacattcttgact 4602631  T
Q  203 gtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggagactctacaattgttttgaatactttcaa 302  Q
     ||||||||||||||||||||||||||||||| |||| ||  |  ||||    || |||| | ||  | |||||||||| ||| |||||||||||| |||    
T  4602630 atatcaggacaacagatccaaatgatattatggtagaattcttttttgaaattgcagatagatttaatagagactctactattcttttgaatacttacaa 4602531  T
Q  303 tgaacttgagagtgatgtaataaatgc 329  Q
    ||||||||||||||||||||| |||||    
T  4602530 tgaacttgagagtgatgtaatgaatgc 4602504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 103 - 180
Target Start/End: Complemental strand, 4506795 - 4506718
Alignment:
Q  103 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaacttt 180  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||||||| |||||||    
T  4506795 tgatatgcagatgagagttatctaacaaatggatatttggacactaaggtagactggattccaggtttgagaaacttt 4506718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 3172679 - 3172597
Alignment:
Q  103 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgatt 185  Q
    ||||||||||||||||| |||  |||||||||||||||||| ||||  || || |||||||||||||||||||||||| ||||    
T  3172679 tgatatgcagatgagagttatgaaacaaatggatatttggacactatagttgactggattccaggtttgaaaaactttagatt 3172597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 103 - 332
Target Start/End: Complemental strand, 4517259 - 4517030
Alignment:
Q  103 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggatatctttgaca 202  Q
    ||||||||||||||||| ||| | ||||||||||||||||| ||||| || || |||||||||||||||  ||||||| || |||||||  |   ||||     
T  4517259 tgatatgcagatgagagttatttgacaaatggatatttggacactaaagttgactggattccaggtttgggaaactttagactaaaggacctgcctgact 4517160  T
Q  203 gtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggagactctacaattgttttgaatactttcaa 302  Q
     ||| || || || ||||| |||||||| ||| || | ||| | ||||| ||||| ||||  |||| || ||    | | |||||||| |||||||   |    
T  4517159 ttataagaactactgatcctaatgatataatgataaaatttatcattgaagcggccgatagggttcatgaagctaattctattgttttcaatacttctga 4517060  T
Q  303 tgaacttgagagtgatgtaataaatgctct 332  Q
    ||||||||||| ||||||||||||||||||    
T  4517059 tgaacttgagaatgatgtaataaatgctct 4517030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 191
Target Start/End: Complemental strand, 4481631 - 4481543
Alignment:
Q  103 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaagga 191  Q
    ||||||||||||||||| ||| ||||| |||||||||||||  | |  ||||| |||||||||||||||||||||||| |||| |||||    
T  4481631 tgatatgcagatgagagttatttaacagatggatatttggacgcaacagtagactggattccaggtttgaaaaactttagattgaagga 4481543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 4514315 - 4514392
Alignment:
Q  103 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaacttt 180  Q
    ||||||||||||||||| ||| | ||||||||||||||||| ||||| || || |||||||||||||||  |||||||    
T  4514315 tgatatgcagatgagagttatttgacaaatggatatttggacactaaagttgactggattccaggtttgcgaaacttt 4514392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 4489555 - 4489627
Alignment:
Q  103 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaa 175  Q
    |||||||||||||||||  |||||||| ||||| ||||||| ||||| || || |||||||||||||||||||    
T  4489555 tgatatgcagatgagagtaatctaacagatggaaatttggacactaaagttgaatggattccaggtttgaaaa 4489627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 4462061 - 4461988
Alignment:
Q  103 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaa 176  Q
    ||||||||||||||||  ||||||||| |||||||||| || ||| | || || ||||||||||||||||||||    
T  4462061 tgatatgcagatgagatttatctaacagatggatatttagacactgaagttgactggattccaggtttgaaaaa 4461988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 192
Target Start/End: Complemental strand, 4470741 - 4470652
Alignment:
Q  103 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggat 192  Q
    ||||||||||||||||| ||||||| | |||||||||| || | | | || || |||||||||||||||||||||||  |||| ||||||    
T  4470741 tgatatgcagatgagagttatctaatagatggatatttcgacattgaagttgactggattccaggtttgaaaaacttcagattgaaggat 4470652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 192
Target Start/End: Complemental strand, 4558065 - 4557974
Alignment:
Q  101 tttgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggat 192  Q
    ||||| ||| ||||||||| ||||| ||||| ||||||||||| ||||| || ||||| |||||||| ||| | ||||||||| | ||||||    
T  4558065 tttgacatgtagatgagagttatctgacaaacggatatttggacactaaagtggattgtattccaggattgcagaactttcgactgaaggat 4557974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 192
Target Start/End: Complemental strand, 4586572 - 4586485
Alignment:
Q  105 atatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggat 192  Q
    |||||||||| |||| ||||| ||||| ||||||||||| ||||| || || || |||||||| ||| | ||||||||| ||||||||    
T  4586572 atatgcagataagagttatctgacaaacggatatttggacactaaagtggactgtattccaggattggagaactttcgactaaaggat 4586485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 183
Target Start/End: Complemental strand, 4571912 - 4571830
Alignment:
Q  101 tttgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcga 183  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||| ||||| || || || || |||||  |||| |||||||||    
T  4571912 tttgatatgcagatgagagttatctgacaaacggatatttggacactaaagtggactgtatgccaggactgaagaactttcga 4571830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 192
Target Start/End: Complemental strand, 4561438 - 4561353
Alignment:
Q  107 atgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggat 192  Q
    |||||||||||||  |||||||||||| |||| |||| || || || || ||||| |||||||||||||||||  |||| ||||||    
T  4561438 atgcagatgagagtgatctaacaaatgaatatctggacacgaaagttgactggatcccaggtttgaaaaacttcagattgaaggat 4561353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 192
Target Start/End: Complemental strand, 4575242 - 4575157
Alignment:
Q  107 atgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggat 192  Q
    |||||||||||||  |||||||||||| ||||||||| || ||  | || ||||| |||||||||||||||||  |||| ||||||    
T  4575242 atgcagatgagagtgatctaacaaatgaatatttggacacaaaaattgactggatcccaggtttgaaaaacttcagattgaaggat 4575157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 4266358 - 4266394
Alignment:
Q  104 gatatgcagatgagagctatctaacaaatggatattt 140  Q
    |||||||||||||||| ||||||||||||||||||||    
T  4266358 gatatgcagatgagagttatctaacaaatggatattt 4266394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 334
Target Start/End: Original strand, 4299195 - 4299246
Alignment:
Q  283 attgttttgaatactttcaatgaacttgagagtgatgtaataaatgctctct 334  Q
    |||||||| |||||||   |||||||||||||||||||||| ||||||||||    
T  4299195 attgtttttaatacttatgatgaacttgagagtgatgtaatgaatgctctct 4299246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 192
Target Start/End: Original strand, 4612910 - 4613001
Alignment:
Q  101 tttgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggat 192  Q
    ||||| ||||||||||||| ||||| ||||| ||||||||||| ||||| || || || |||| ||| ||| | ||||||||| | ||||||    
T  4612910 tttgacatgcagatgagagttatctgacaaacggatatttggatactaaagtggactgtattcaaggattgcagaactttcgactgaaggat 4613001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 4484033 - 4484111
Alignment:
Q  103 tgatatgcagatgagagctatctaa-caaatggatatttggaaactaatgtagattggattccaggtttgaaaaacttt 180  Q
    ||||||||| || |||| ||||||| |||||| ||||||||| ||| | ||||| ||| |||||| |||||||||||||    
T  4484033 tgatatgcaaataagagttatctaagcaaatgtatatttggacactgaagtagactgggttccagatttgaaaaacttt 4484111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 167
Target Start/End: Complemental strand, 4580981 - 4580915
Alignment:
Q  101 tttgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccagg 167  Q
    |||||| | ||||||| || ||||| ||||| ||||||||||| ||||| |||||||| ||||||||    
T  4580981 tttgatgtacagatgacagttatctcacaaacggatatttggacactaaagtagattgtattccagg 4580915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 332
Target Start/End: Complemental strand, 4568802 - 4568753
Alignment:
Q  283 attgttttgaatactttcaatgaacttgagagtgatgtaataaatgctct 332  Q
    |||||||| |||||||  ||||||||||||||||||||| |||| |||||    
T  4568802 attgttttcaatacttataatgaacttgagagtgatgtagtaaaggctct 4568753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 4259354 - 4259426
Alignment:
Q  109 gcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttc 181  Q
    |||||| ||||||||||||||||||||||| |||| || || ||||| ||  |||| || ||||| |||||||    
T  4259354 gcagataagagctatctaacaaatggatatctggataccaaagtagactgtgttcctggattgaagaactttc 4259426  T

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Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 4266559 - 4266599
Alignment:
Q  302 atgaacttgagagtgatgtaataaatgctctctcctctatg 342  Q
    ||||||||||||||||||| || |||||||||| |||||||    
T  4266559 atgaacttgagagtgatgttatgaatgctctctactctatg 4266599  T

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Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 4599084 - 4599028
Alignment:
Q  127 acaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcga 183  Q
    ||||| ||||||||||||||||| |||||||| ||||| ||  || |||||||||||    
T  4599084 acaaacggatatttggaaactaaagtagattgtattcctggactgcaaaactttcga 4599028  T

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Target: scaffold0199 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 103 - 325
Target Start/End: Complemental strand, 405 - 183
Alignment:
Q  103 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggatatctttgaca 202  Q
    |||||||||||||||||  ||||||||||||||||||||||||| || || || |||||||||||||||||||||||||| || |||||| |  |||||     
T  405 tgatatgcagatgagagacatctaacaaatggatatttggaaacaaaagtcgagtggattccaggtttgaaaaactttcggttgaaggatgttgttgact 306  T
Q  203 gtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggagactctacaattgttttgaatactttcaa 302  Q
    ||||||| ||||| ||||||||||||||||||||||||||| |||||||||  |||||||||||||   |||||||||||||| ||||||||||||||||    
T  305 gtatcagaacaacggatccaaatgatattatgttagactttttaattgatgtcgctgataaagttcacagagactctacaattattttgaatactttcaa 206  T
Q  303 tgaacttgagagtgatgtaataa 325  Q
    |||||||||||||||||||||||    
T  205 tgaacttgagagtgatgtaataa 183  T

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Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 103 - 325
Target Start/End: Complemental strand, 1675168 - 1674946
Alignment:
Q  103 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggatatctttgaca 202  Q
    |||||||||||||||||  ||||||||||||||||||||||||| || || || |||||||||||||||||||||||||| || |||||| |  |||||     
T  1675168 tgatatgcagatgagagacatctaacaaatggatatttggaaacaaaagtcgagtggattccaggtttgaaaaactttcggttgaaggatgttgttgact 1675069  T
Q  203 gtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggagactctacaattgttttgaatactttcaa 302  Q
    ||||||| ||||| ||||||||||||||||||||||||||| |||||||||  |||||||||||||   |||||||||||||| ||||||||||||||||    
T  1675068 gtatcagaacaacggatccaaatgatattatgttagactttttaattgatgtcgctgataaagttcacagagactctacaattattttgaatactttcaa 1674969  T
Q  303 tgaacttgagagtgatgtaataa 325  Q
    |||||||||||||||||||||||    
T  1674968 tgaacttgagagtgatgtaataa 1674946  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 20863037 - 20863105
Alignment:
Q  103 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttg 171  Q
    |||||| |||||||||| ||||||||||||||||||||||| ||||| || ||| ||||||||||||||    
T  20863037 tgatatacagatgagagttatctaacaaatggatatttggagactaaagttgatcggattccaggtttg 20863105  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 334
Target Start/End: Original strand, 20863217 - 20863268
Alignment:
Q  283 attgttttgaatactttcaatgaacttgagagtgatgtaataaatgctctct 334  Q
    |||||||| |||||||||||||| |||||||||||||| || |||| |||||    
T  20863217 attgttttcaatactttcaatgagcttgagagtgatgttatgaatgttctct 20863268  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 16685482 - 16685544
Alignment:
Q  105 atatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccagg 167  Q
    ||||||||||||||| ||||| ||||| ||||||||||| ||||| || || || ||||||||    
T  16685482 atatgcagatgagagttatctgacaaacggatatttggacactaaagtggactgtattccagg 16685544  T

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Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 108 - 341
Target Start/End: Complemental strand, 1282050 - 1281817
Alignment:
Q  108 tgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggatatctttgacagtatc 207  Q
    |||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||| || || || ||||||||  |||||  ||||    
T  1282050 tgcagatgagagttatctaacaaatggatatttggaaacaaaagtagattggattccaggtttgaaaaatttccggttgaaggatattgttgactttatc 1281951  T
Q  208 aggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggagactctacaattgttttgaatactttcaatgaac 307  Q
    ||||||| ||||| ||| |||||||||||||| ||  | |||||   ||| |||| ||||  | |||||||||| ||| |||||||||||||||||||||    
T  1281950 aggacaagagatcgaaacgatattatgttagaattctttattgaaatggcagatagagttaatagagactctactattcttttgaatactttcaatgaac 1281851  T
Q  308 ttgagagtgatgtaataaatgctctctcctctat 341  Q
    ||||||||||||||||||||||||||||||||||    
T  1281850 ttgagagtgatgtaataaatgctctctcctctat 1281817  T

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Target: scaffold0288 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 342
Target Start/End: Original strand, 2918 - 3151
Alignment:
Q  109 gcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggatatctttgacagtatca 208  Q
    |||||||| || ||| | |||| |||||||||||| |  || |||||||| ||||| ||| |||||||||||||| |||||||  |   ||||  ||| |    
T  2918 gcagatgatagttatttgacaagtggatatttggacaacaaagtagattgtattccgggtatgaaaaactttcgactaaaggaccttcctgactttataa 3017  T
Q  209 ggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggagactctacaattgttttgaatactttcaatgaact 308  Q
    | |||| |||||  |||||| ||||| |||| ||| | ||||| || || ||| || |||   |||  ||| |||||||||| || ||||  ||||||||    
T  3018 gaacaaaagatctgaatgattttatggtagaatttttcattgaagcagcagatcaatttcacagagcttctgcaattgtttttaacacttataatgaact 3117  T
Q  309 tgagagtgatgtaataaatgctctctcctctatg 342  Q
    ||||||||||||| | ||||| |||  |||||||    
T  3118 tgagagtgatgtactgaatgcgctccactctatg 3151  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 24103938 - 24103903
Alignment:
Q  105 atatgcagatgagagctatctaacaaatggatattt 140  Q
    ||||||||||||||| ||||||||||||||||||||    
T  24103938 atatgcagatgagagttatctaacaaatggatattt 24103903  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 24103738 - 24103698
Alignment:
Q  302 atgaacttgagagtgatgtaataaatgctctctcctctatg 342  Q
    ||||||||||||||||||| || |||||||||| |||||||    
T  24103738 atgaacttgagagtgatgttatgaatgctctctactctatg 24103698  T

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