View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_152 (Length: 335)

Name: NF10481A_low_152
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_152
NF10481A_low_152
[»] chr3 (1 HSPs)
chr3 (48-335)||(42821874-42822161)


Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 48 - 335
Target Start/End: Complemental strand, 42822161 - 42821874
Alignment:
Q  48 tacgccaaattttattgtttcgtatcttagaaatgcaccataaatttataattattacttcatcaccaatgatagaattagaaatgttgatgataatgca 147  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  42822161 tacgccaaattttattgtttcgtatcttacaaatgcaccataaatttataattattacttcatcaccaatgatacaattagaaatgttgatgataatgca 42822062  T
Q  148 tcaggattcaaccttggctgcaatgttgttgaggccaggaccattattagcattaaccagtgcacaattcattgagaatgttgaagtggagaaggtgccc 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  42822061 tcaggattcaaccttggctgcaatgttgttgaggccaggaccattattagcattaaccagggcacaattcatagagaatgttgaagtggagaaggtgccc 42821962  T
Q  248 cgtgtgtacataaagacaaggcaagacaatgtagtaaaaccaaagcaacaggaagccatgataaataggtggccaccaggtagtgtgt 335  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42821961 cgtgtgtacataaagacaagacaagacaatgtagtaaaaccaaagcaacaggaagccatgataaataggtggccaccaggtagtgtgt 42821874  T

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