View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10481A_low_156 (Length: 334)
Name: NF10481A_low_156
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_156 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 3 - 326
Target Start/End: Original strand, 35343137 - 35343460
Alignment:
| Q |
3 |
tatatgcatccactcaaacattctattttgtcaatattcttgattctttactgctatttccaacatttaagctgaattgtaaagacaattgccaatgtgg |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35343137 |
tatatgcatccactcaaacattctattttgtcaatattcttgattctttgctgctatttccaacatttaagctgaattgtaaagacaattgccaatgtgg |
35343236 |
T |
|
| Q |
103 |
ctgcccaatatgccattacacatgcaggcacgtagcaatgctcacaccttaagtaaacatacacacttcttgtgtggtttaattgtggtggaattactca |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
35343237 |
ctgcccaatatgccattacacatgcaggcacgtagcaaagctcacaccttaagtaaacatacacacttcttgtgtggtttaattgtggtggaataactca |
35343336 |
T |
|
| Q |
203 |
acaagttctcttctagttatatataacataaaactctctaatcctaactcaactcacacaactatcttagcatatcatataactaattccattttcttct |
302 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35343337 |
acaagttctcttctagttatatataacacaaaactctctaatcctaactcaactcacacaactatcttagcatatcatataactaattccattttcttct |
35343436 |
T |
|
| Q |
303 |
ttttaacatacacttttcacatag |
326 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
35343437 |
ttttaacatacacttttcacatag |
35343460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 3 - 227
Target Start/End: Complemental strand, 35368637 - 35368411
Alignment:
| Q |
3 |
tatatgcatccactcaaacattctattttgtcaatattcttgattctttactgctatttccaacatttaagctgaattgtaaagacaattgccaatgtgg |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35368637 |
tatatgcatccactcaaacattctattttgtcaatattcttgattctttgctgctatttccaacatttaagctgaattgtaaagacaattgccaatgtgg |
35368538 |
T |
|
| Q |
103 |
ctgcccaatatgccattacacatgcaggcacgtagcaatgctcacacc-ttaagtaaacatacacacttcttgtgtggtttaattgtggtggaattact- |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| || ||||| |||||||||||||||||||||||||| ||||| | ||| ||| |
|
|
| T |
35368537 |
ctgcccaatatgccattacacatgcaggcacgtagccatgctcattcctttaagcaaacatacacacttcttgtgtggtttgcttgtgttagaacaactc |
35368438 |
T |
|
| Q |
201 |
caacaagttctcttctagttatatata |
227 |
Q |
| |
|
|||||| || ||||||||||||||||| |
|
|
| T |
35368437 |
caacaacttatcttctagttatatata |
35368411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 3 - 319
Target Start/End: Original strand, 35347809 - 35348143
Alignment:
| Q |
3 |
tatatgcatccactcaaacattctattttgtcaatattcttgattctttactgctatttcca-ac----atttaagctgaattgtaaagacaattgccaa |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||| || || || ||||||||||| ||||||||||||| |
|
|
| T |
35347809 |
tatatgcatccactcaaacattctattttgtcaatattcttgagtctttgcttct-tttccatacgtgtatatatgctgaattgtagagacaattgccaa |
35347907 |
T |
|
| Q |
98 |
tgtggctgcccaatatgccat--tacacatgcaggcacgtagcaatgctcacaccttaagtaaacatacacacttcttgtgtggtttaattgtggtggaa |
195 |
Q |
| |
|
||||||||| ||| | |||| |||||||||||||||||||| ||||||| |||||||| |||| ||||||||||||||||||||| ||||| | ||| |
|
|
| T |
35347908 |
tgtggctgcacaagaccccatattacacatgcaggcacgtagccatgctcataccttaagcaaacttacacacttcttgtgtggtttgcttgtgttagaa |
35348007 |
T |
|
| Q |
196 |
ttactcaacaagttctcttctagttatatataacata-aaactctctaatcctaa-----------ctcaactcacacaactatcttagcatatcatata |
283 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||| | |||||||| |||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
35348008 |
ctactcaacaacttctcttcttgttatatataacacacaaactctccaatcctaactcaaacacagctcaactcacacaactaccttagcatatcatata |
35348107 |
T |
|
| Q |
284 |
actaattccattttcttctttttaacatacactttt |
319 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
35348108 |
actaattccattttcttctttataacatacattttt |
35348143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 8 - 326
Target Start/End: Complemental strand, 35356157 - 35355823
Alignment:
| Q |
8 |
gcatccactcaaacattctattttgtcaatattcttgattctttactgctatttccaacatttaagctgaat-tgtaaagacaattgccaatgtggctgc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35356157 |
gcatccactcaaacattctattttgtcaatattcttgattcttagctgctatttccaacgtgtaagctgaatgtgtaaagacaattgccaatgtggctgc |
35356058 |
T |
|
| Q |
107 |
ccaatatgccattacacatgcaggcacgtagcaatgctcacaccttaagtaaacatacacacttcttgtgtggtttaattgtggtggaattact-caaca |
205 |
Q |
| |
|
||| || | ||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||| ||||| | ||| ||| ||||| |
|
|
| T |
35356057 |
acaagattctattacacatgcaggcactgaggtatgctcacaccttaagcaaacatacacacttcttgtgtggtttacttgtgttagaacaactccaaca |
35355958 |
T |
|
| Q |
206 |
agttctcttctagttatatataacata-aaactctctaatcct-----------aactcaactcacacaactatctta--gcatatcatataactaattc |
291 |
Q |
| |
|
| ||||| | ||||||||||||| | |||||||| |||||| ||||||||||||||||||| |||| | |||||||||||||||||| |
|
|
| T |
35355957 |
a-cactctttttgttatatataacacacaaactctccaatcctaactcaaacacaactcaactcacacaactaccttagtgtatatcatataactaattc |
35355859 |
T |
|
| Q |
292 |
cattttcttctttt-taacatacacttttcacatag |
326 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||| |
|
|
| T |
35355858 |
cattttcttcttttccaacatacactttttacatag |
35355823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 7 - 254
Target Start/End: Complemental strand, 35374784 - 35374536
Alignment:
| Q |
7 |
tgcatccactcaaacattctattttgtcaatattcttgattctttactgctatttccaacatttaagctgaattgtaaagacaattgccaatgtggctgc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | || ||||||| |||||||||||||||||||||||||| |
|
|
| T |
35374784 |
tgcatccactcaaacattctattttgtcaatattcttgattcttagctgctatttccaacgtgtatgctgaat-gtaaagacaattgccaatgtggctgc |
35374686 |
T |
|
| Q |
107 |
ccaatatgccattacacatgcaggcacgtagcaatgctcacaccttaagtaaacatacacacttcttgtgtggtttaattgtggtggaattact-caaca |
205 |
Q |
| |
|
||| || | ||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||| ||||| | ||| ||| ||||| |
|
|
| T |
35374685 |
acaagattctattacacatgcaggcactgaggtatgctcacaccttaagcaaacatacacacttcttgtgtggtttgcttgtgttagaacaactccaaca |
35374586 |
T |
|
| Q |
206 |
agttctcttctagttatatataacata-aaactctctaatcctaactcaa |
254 |
Q |
| |
|
| ||||| | ||||||||||||| | |||||||| ||||||||||||| |
|
|
| T |
35374585 |
acaactctttttgttatatataacacacaaactctccaatcctaactcaa |
35374536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 35336017 - 35335792
Alignment:
| Q |
3 |
tatatgcatccactcaaacattctattttgtcaatattcttgattctttactgctatttccaacatttaagctgaattgtaaagacaattgccaatgtgg |
102 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| || || |||||||| | |||| |||||||||||||||||||||||||||| |
|
|
| T |
35336017 |
tatatgcatccactcaaacattttattttgtcaatattcttgattctttgcttct-tttccaacgtgtaagttgaattgtaaagacaattgccaatgtgg |
35335919 |
T |
|
| Q |
103 |
ctgcccaatatgccattacacatgcaggcacgtagcaatgctcacaccttaagtaaacatacacacttcttgtgtggtttaattgtggtggaattactca |
202 |
Q |
| |
|
|| | ||| |||||||||||||||||||||| ||| |||||||||||||||| ||||| ||||||||| || ||||||| ||||| | ||| |||| |
|
|
| T |
35335918 |
ctacacaagatgccattacacatgcaggcaccgagccatgctcacaccttaagcaaacacacacacttcctgcgtggtttgcttgtgctagaacagctca |
35335819 |
T |
|
| Q |
203 |
acaagttctcttctagttatatataac |
229 |
Q |
| |
|
||| || ||||||||||||||||||| |
|
|
| T |
35335818 |
acagcttttcttctagttatatataac |
35335792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 3 - 190
Target Start/End: Complemental strand, 35364826 - 35364638
Alignment:
| Q |
3 |
tatatgcatccactcaaaca-ttctattttgtcaatattcttgattctttactgctatttccaacatttaagctgaattgtaaagacaattgccaatgtg |
101 |
Q |
| |
|
|||||||||||||| ||| | || |||||| || ||||||||||||||| || || || ||||||| || |||||||||||||||||| |||||||||| |
|
|
| T |
35364826 |
tatatgcatccactaaaaaaattatattttcccattattcttgattcttttcttcttttcccaacatgtacgctgaattgtaaagacaaatgccaatgtg |
35364727 |
T |
|
| Q |
102 |
gctgcccaatatgccattacacatgcaggcacgtagcaatgctcacaccttaagtaaacatacacacttcttgtgtggtttaattgtgg |
190 |
Q |
| |
|
||||| ||| || |||||||||||||| ||| | ||| |||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
35364726 |
gctgcacaagatcccattacacatgcaagcaaggagccatgctcacaccttaagcaaacatacacacttcttgtgtggtttacttgtgg |
35364638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 3 - 189
Target Start/End: Complemental strand, 35346530 - 35346345
Alignment:
| Q |
3 |
tatatgcatccactcaaacattctattttgtcaatattcttgattctttactgctatttccaacatttaagctgaattgtaaagacaattgccaatgtgg |
102 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||| | |||| |||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
35346530 |
tatatgcatccactcaaacattctatttggt---tattcttgattctatgctgcattttccaacgtgtaagctgaattgtaaagacaattgccaatgtgg |
35346434 |
T |
|
| Q |
103 |
ctgcccaatatgccattacacatgcaggcacgtagcaatgctcacaccttaagtaa--acatacacacttcttgtgtggtttaattgtg |
189 |
Q |
| |
|
|||| ||| || ||||| |||||||||||| ||| |||||||||||||||| || ||| ||||||||||||||||||||| ||||| |
|
|
| T |
35346433 |
ctgcacaagatcccattgcacatgcaggcatcgagccatgctcacaccttaagcaaacacacacacacttcttgtgtggtttacttgtg |
35346345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 3 - 171
Target Start/End: Complemental strand, 35351603 - 35351430
Alignment:
| Q |
3 |
tatatgcatccactcaaacattctattttgtcaatattcttgattcttta-----ctgctatttccaacatttaagctgaattgtaaagacaattgccaa |
97 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||| | | ||||| || |||| ||||||||||| |
|
|
| T |
35351603 |
tatatgcatccactcaaacattcgattttttcaatattcttgattctttaatttgctgcttcttccaacgtgcatgctgacttataaaaacaattgccaa |
35351504 |
T |
|
| Q |
98 |
tgtggctgcccaatatgccattacacatgcaggcacgtagcaatgctcacaccttaagtaaacatacacacttc |
171 |
Q |
| |
|
||||||||| ||| || ||||||||||||| ||||||||| ||||||||||||| || ||| ||||||||||| |
|
|
| T |
35351503 |
tgtggctgcacaagattccattacacatgctagcacgtagccatgctcacacctttagcaaagatacacacttc |
35351430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 35371983 - 35371815
Alignment:
| Q |
19 |
aacattctattttgtcaatattcttgattctttactgctatttccaacatttaagctgaattgtaaagacaattgccaatgtggctgcccaatatgccat |
118 |
Q |
| |
|
|||||||||||| |||| ||||||||||||| |||| || |||| | |||||||||||||||||| || |||||||| ||||| ||| || |||| |
|
|
| T |
35371983 |
aacattctatttagtca---ttcttgattctttgttgcttttatcaacgtgtaagctgaattgtaaagagaaatgccaatgatgctgcacaagatcccat |
35371887 |
T |
|
| Q |
119 |
tacacatgcaggcacgtagcaatgctcacaccttaagtaaacatacacacttcttgtgtggtttaattgtgg |
190 |
Q |
| |
|
|||||||| | ||| | ||| |||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
35371886 |
tacacatggaagcaaggagccatgctcacaccttaagcaaacatacacacttcttgtgtggtttacttgtgg |
35371815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 265
Target Start/End: Complemental strand, 35341188 - 35340911
Alignment:
| Q |
8 |
gcatccactcaaacattctattttgtcaat----attcttgattctttactgctatttccaacatttaagctgaattgtaaagacaa--ttgccaatgtg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||| | ||||| ||||||| | || |||||||||||||||||| ||||||||||| |
|
|
| T |
35341188 |
gcatccactcaaacattctattttgtcaatattaattcttgaatctatgctgcttcttccaacgtgtatgctgaattgtaaagacaattttgccaatgtg |
35341089 |
T |
|
| Q |
102 |
gctgcccaatatgcc-----attacacatgcaggcacgtagcaatgctcacaccttaagtaaacatacacacttcttgtgtggtttaattgt-------g |
189 |
Q |
| |
|
||||| ||| || || |||||||| ||| ||| ||| |||| ||||||| ||| || |||||||||| |||||||||| |||| | |
|
|
| T |
35341088 |
gctgcacaagatcccattatattacacaagcaagcaatgagcgatgcacacacctgaagcaatattacacacttcctgtgtggtttgcttgttggaggag |
35340989 |
T |
|
| Q |
190 |
gtggaattact-caacaagttctcttctagttatatataacata-aaactctctaatcctaactcaactcacacaact |
265 |
Q |
| |
|
| ||| ||| |||||||||||||||| |||||||||| || | |||||||| ||| |||||||||||||||||||| |
|
|
| T |
35340988 |
ggagaacaactccaacaagttctcttcttgttatatatatcacacaaactctccaatactaactcaactcacacaact |
35340911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 35346289 - 35346222
Alignment:
| Q |
233 |
aaactctctaatcctaactcaactcacacaactatcttagcatatcatataactaattccattttcttc |
301 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||| |||||||| ||||| |||||| |||||||||| |
|
|
| T |
35346289 |
aaactctccaatcctaactcagctcacacaactaacttagcatccaatatagctaatt-cattttcttc |
35346222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 35364575 - 35364516
Alignment:
| Q |
248 |
aactcaactcacacaactatcttagcatatcatataactaa--ttccattttcttctttt |
305 |
Q |
| |
|
||||||||||||| ||||| |||||||| ||||||||| || |||||||||| |||||| |
|
|
| T |
35364575 |
aactcaactcacataactaccttagcatctcatataacaaaatttccattttcatctttt |
35364516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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