View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_157 (Length: 333)
Name: NF10481A_low_157
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_157 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 43157607 - 43157273
Alignment:
| Q |
1 |
gtatcatttgcttcaagaggtcttatagattcgatcttcgaccctatttataaaatattgaataaaagacatgttgatatgaagttaagagtttgattga |
100 |
Q |
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| T |
43157607 |
gtatcatttgcttcaagaggtcttatagattccatcttcgaccctatttgtaaaatattgaataaaagacatgctgatatgaatttaagagtttgattga |
43157508 |
T |
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| Q |
101 |
gtttatcgcaacattcctttaatcaacttgaagtaatcatatttgaggtgtgttgaatnnnnnnngtgtgtatatcatacattcaagattgagctttgat |
200 |
Q |
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| T |
43157507 |
gtttatcgcaacattcctttaatcaacttgaagtaatcatatttgaggtgtgttgaataaaaaaagtgtgtatctcatatattcaagattgagctttgat |
43157408 |
T |
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| Q |
201 |
ttgtcacattgtaagaatctacggttcattcaactagactcaactccgttggttctaattacacctcgttaattaaatatttgtgtgccta--ttgagaa |
298 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43157407 |
ttgtcacattgtgagaatctatagttcattcaactagactcaactccgttggttctaattacacctcgttaattaaatatttgtgtgcctattttgagaa |
43157308 |
T |
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| Q |
299 |
atatattattgaaagtttatttaaagtaaaaatga |
333 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
43157307 |
atatattattgaaagtttatttaaagtaaaaatga |
43157273 |
T |
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