View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_16 (Length: 494)
Name: NF10481A_low_16
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 13 - 476
Target Start/End: Original strand, 24110723 - 24111187
Alignment:
| Q |
13 |
ggacatcaagaaaagaaatcaatacagttcatggcatctagcaagttaaaccacaacttaaatgatggtatgcatgctcttagaatctataatatctttc |
112 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
24110723 |
ggacatcaaggaaggaaatcaatacagttcatggcatctagcaagttaaaccacaactcaaatgatggtatgcatgctcttagaatctataatctctttc |
24110822 |
T |
|
| Q |
113 |
tccctttattactattcaactctgaagtaatcaattagtagatcataatactagatcattgacaacgactttgaaatttgacatcactatgcagagggta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
24110823 |
tccctttattactattcaactctgaagtaatcaattagtagatcataatactagatcattgacaacgactttgaaatttggcgtcactatgcagagggta |
24110922 |
T |
|
| Q |
213 |
gtgcttctatcatttgatactgccctacatattttatgatcgagtatgagtgtacttctctcatttgatactgcattgtgtagtacttctctcaagcgat |
312 |
Q |
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| T |
24110923 |
gtgcttctctcatttgatactgcactacatattttatgatcgagtatgagtgtacttctctcatttgatactgcattgtgtagtacttctctcaagcgat |
24111022 |
T |
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| Q |
313 |
attgtactacaccccatgacataatttcgagtgtgcttctctttagtgatattccactatgtggtcggtcctctctagtgatattgtgtcac-ttcagta |
411 |
Q |
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||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| |
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| T |
24111023 |
attgtactacaccccatgacataatttcgggtatgcttctctttagtgatattccactatgtggtcgctcctctctagtgatattgtgtcacattcggta |
24111122 |
T |
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| Q |
412 |
tgatacttctctctagcgatattgcatcatacacaccctatagatcaaatacttctcaattgctg |
476 |
Q |
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| T |
24111123 |
tgatacttctctctagcgatactgcatcatacacaccctatagatcaaatacttctcaattgctg |
24111187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 123 - 378
Target Start/End: Complemental strand, 17557061 - 17556805
Alignment:
| Q |
123 |
actattcaactctgaagtaatcaattagtagatcataatactagatcattgacaacgactttgaaatttgacatcactatgcagagggtagtgcttctat |
222 |
Q |
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||||||| | ||| ||||| |||||||||| ||||| || ||| ||| ||||||||||| | || |||| ||||| ||||||||||||||||||| | |
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| T |
17557061 |
actattctattctaaagtactcaattagtacatcatgattctacgtcactgacaacgactctagaaattgatgtcactctgcagagggtagtgcttctct |
17556962 |
T |
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| Q |
223 |
catttgatactgccctacatattttatgatcgagtatgagtgtacttctctcatt-tgatactgcattgtgtagtacttctctcaagcgatattgtacta |
321 |
Q |
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| T |
17556961 |
catgtgatattgcactacaaattttatgatccaatatgggtgtacttctctcattatgataatgcactgcgtagtacttatatctagtgatattgtacta |
17556862 |
T |
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| Q |
322 |
caccccatgacataatttcgagtgtgcttctctttagtgatattccactatgtggtc |
378 |
Q |
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| T |
17556861 |
caccccataacataaatttaggtgtgcttctctcaagtgatactgcaccatgtggtc |
17556805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 343 - 400
Target Start/End: Original strand, 24111188 - 24111245
Alignment:
| Q |
343 |
gtgtgcttctctttagtgatattccactatgtggtcggtcctctctagtgatattgtg |
400 |
Q |
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| T |
24111188 |
gtgtgcttctctctagtgatattgcaccatgtggtcacttctctctagtgatattgtg |
24111245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 423
Target Start/End: Complemental strand, 17556695 - 17556627
Alignment:
| Q |
356 |
tagtgatattccactatgtggtcggtcctctctagtgatattgtgtcacttc-agtatgatacttctct |
423 |
Q |
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| T |
17556695 |
tagtgatattgcaccatgaggtcgcttctctctattgatattgtgccacatccagtatgatacttctct |
17556627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 196 - 466
Target Start/End: Original strand, 19955942 - 19956212
Alignment:
| Q |
196 |
tcactatgcagagggtagtgcttctatcatttgatactgccctacatattttatgatcgagtatgagtgtacttctctcatttgatactgcattgtgtag |
295 |
Q |
| |
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||||| |||| ||||| |||||||| ||| ||||| | || |||||| | |||| || |||||| |||||||||||||| | ||| || ||| |||| |
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| T |
19955942 |
tcactctgcaaagggttgtgcttctctcaagtgatatttccatacatagtctatggtccagtatgggtgtacttctctcaagtaataatgaattatgtaa |
19956041 |
T |
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| Q |
296 |
tacttctctcaagcgatattgtactacaccccatgacataatttcgagtgtgcttctctttagtgatattccactatgtggtcggtcctctctagtgata |
395 |
Q |
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||||||||||||| |||| |||| || |||| || ||| ||||| |||| ||||||| |||||||||| || || |||| | | ||||||||||||| |
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| T |
19956042 |
tacttctctcaagtgatagtgtattataccctataacacaattt-aagtgaccttctctctagtgatattgcatcatatggttgtttctctctagtgata |
19956140 |
T |
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| Q |
396 |
ttgtgtcactt-cagtatgatacttctctctagcgatattgcatcatacacaccctatagatcaaatacttc |
466 |
Q |
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||||||||||| | ||||| | ||||| ||||| ||||||||| |||| | | ||| ||||||||||||| |
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| T |
19956141 |
ttgtgtcacttccggtatgcttcttctttctagtgatattgcagtataccaagcatatggatcaaatacttc |
19956212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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