View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_162 (Length: 330)
Name: NF10481A_low_162
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_162 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 10 - 173
Target Start/End: Complemental strand, 2647460 - 2647297
Alignment:
| Q |
10 |
attatacttacaccttccttatataagatcctacatattttatcttttcattaatatatgaacctagagacaaacctcaaagaaatcttaaattgacata |
109 |
Q |
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| T |
2647460 |
attatacttacaccttccttatataagatcctacatattttatcttttcattaatatatgaacctagagacaaacctcaaagaaatcttaaattgacata |
2647361 |
T |
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| Q |
110 |
gtctattaggcatgagaaaagatcatacatctcacaattaaaatagcatctcgagatctagacc |
173 |
Q |
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| T |
2647360 |
gtctattaggcatgagaaaagatcatacatctcacaattaaaatagcatctcgagatctagacc |
2647297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 210 - 329
Target Start/End: Complemental strand, 2647261 - 2647142
Alignment:
| Q |
210 |
gaaatcattttgttgtggtaaatgtgagtaacaagtctaacgatagaagaaaaactgaatgttgagtaatatatatgtgactcatatacttaatgtcgta |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| || |||| ||||||||||| |
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| T |
2647261 |
gaaatcattttgttgtggtaaatgtgagtaacaagtctcacgatagaagaaaaaatgaatgttgagtaatatatatgtgattcgtatatttaatgtcgta |
2647162 |
T |
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| Q |
310 |
agtctttgggtttagatatg |
329 |
Q |
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|||||||||||||||||||| |
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| T |
2647161 |
agtctttgggtttagatatg |
2647142 |
T |
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