View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_170 (Length: 324)
Name: NF10481A_low_170
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_170 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 49 - 324
Target Start/End: Complemental strand, 31869095 - 31868820
Alignment:
| Q |
49 |
agttattcatcaaagtctcgtttattcaatgaccagagttaaacgaggatcaatcgctcggaaacggaggacaaaagttcgtttatttacatcaagcttt |
148 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||| |||||||||| |
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| T |
31869095 |
agttattcatcaaagtctcgtttattcaatgaccagagttaaacgaggatccatcgctcgaaaacggaggacaaaaattcgtttatttatatcaagcttt |
31868996 |
T |
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| Q |
149 |
cgcggagctcattcaaaacttacatcaataattagtcgatnnnnnnnnnnnnnnnntgataacaccaacaaacaaatgtgcataatttatagcctttttg |
248 |
Q |
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|||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31868995 |
tgcggagctcatttaaaacttacatcaataattagttgataaaataaaaaataaaatgataacaccaacaaacaaatgtgcataatttatagcctttttg |
31868896 |
T |
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| Q |
249 |
gttaaatagaaattggaaattatcattgcctgtaaaatcctgctaacaggaaaatgaaatttttaatattttatga |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31868895 |
gttaaatagaaattggaaattatcattgcctgtaaaatcctgctaacaggaaaatgaaatttttaatattttatga |
31868820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 49 - 170
Target Start/End: Original strand, 33327250 - 33327371
Alignment:
| Q |
49 |
agttattcatcaaagtctcgtttattcaatgaccagagttaaacgaggatcaatcgctcggaaacggaggacaaaagttcgtttatttacatcaagcttt |
148 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | |||||||||||||||||||| |
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| T |
33327250 |
agttattcatcaaagtctcacttattcaatgaccagagttaaacgaggatctatcgctcgaaaacggaggacaaaaatgagtttatttacatcaagcttt |
33327349 |
T |
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| Q |
149 |
cgcggagctcattcaaaactta |
170 |
Q |
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| T |
33327350 |
cgcggagctcattcaaaactta |
33327371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 49 - 170
Target Start/End: Complemental strand, 31872114 - 31871993
Alignment:
| Q |
49 |
agttattcatcaaagtctcgtttattcaatgaccagagttaaacgaggatcaatcgctcggaaacggaggacaaaagttcgtttatttacatcaagcttt |
148 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | |||||||||||||||||||| |
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| T |
31872114 |
agttattcatcaaagtctcacttattcaatgaccagagttaaacgaggatctatcgctcgaaaacggaggacaaaaatgagtttatttacatcaagcttt |
31872015 |
T |
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| Q |
149 |
cgcggagctcattcaaaactta |
170 |
Q |
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| T |
31872014 |
cgcggagctcattcaaaactta |
31871993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 49 - 170
Target Start/End: Complemental strand, 18330211 - 18330090
Alignment:
| Q |
49 |
agttattcatcaaagtctcgtttattcaatgaccagagttaaacgaggatcaatcgctcggaaacggaggacaaaagttcgtttatttacatcaagcttt |
148 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | |||||||||||||||||||| |
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| T |
18330211 |
agttattcatcaaagtctcacttattcaatgaccagagttaaacgaggatctatcgctcgaaaacggaggacaaaaatgagtttatttacatcaagcttt |
18330112 |
T |
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| Q |
149 |
cgcggagctcattcaaaactta |
170 |
Q |
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|||||||||||||||||||||| |
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| T |
18330111 |
cgcggagctcattcaaaactta |
18330090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 38484788 - 38484744
Alignment:
| Q |
49 |
agttattcatcaaagtctcgtttattcaatgaccagagttaaacg |
93 |
Q |
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| T |
38484788 |
agttattcatcaaagtctcacttattcaatgaccagagttaaacg |
38484744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 49 - 170
Target Start/End: Complemental strand, 45222964 - 45222843
Alignment:
| Q |
49 |
agttattcatcaaagtctcgtttattcaatgaccagagttaaacgaggatcaatcgctcggaaacggaggacaaaagttcgtttatttacatcaagcttt |
148 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | |||||||||||||||||||| |
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| T |
45222964 |
agttattcatcaaagtctcacttattcaatgaccagagttaaacgaggatctatcgctcgaaaacggaggacaaaaatgagtttatttacatcaagcttt |
45222865 |
T |
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| Q |
149 |
cgcggagctcattcaaaactta |
170 |
Q |
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|||||||||||||||||||||| |
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| T |
45222864 |
cgcggagctcattcaaaactta |
45222843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 171
Target Start/End: Original strand, 38696301 - 38696389
Alignment:
| Q |
85 |
agttaaacgaggatcaat--cgctcggaaacggaggacaaaagttcgtttatttacatcaagctttcgcggagctcattcaaaacttac |
171 |
Q |
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||||||||||||||| || ||||| ||| ||||||||||| || ||| ||||||||||||||| ||| | |||||||||||||||| |
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| T |
38696301 |
agttaaacgaggatctataacgctccaaaatggaggacaaaaatttgttcctttacatcaagcttttgcgaaactcattcaaaacttac |
38696389 |
T |
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