View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_171 (Length: 322)
Name: NF10481A_low_171
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_171 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 322
Target Start/End: Original strand, 33562975 - 33563284
Alignment:
| Q |
13 |
atactcaaggtgctaaaaacattatgcgatgtgagcgcgttcaagtttctggtatctcaagattgaagctcggaagttatgctaattcattgcatgttac |
112 |
Q |
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| T |
33562975 |
atactcaaggtgctaaaaacattatgcgatgtgagcgcgttcaagtttctggtatctcaagattgaagctcggaagttatgctaattcattgcatgttac |
33563074 |
T |
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| Q |
113 |
tttggctccatctgttgcgattcctgagagattgcataacaaaattaaggtttgttttcataggtaagtacataacaccttctctcaggtgcatgcttgg |
212 |
Q |
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| T |
33563075 |
tttggctccatctgttgcgattcctgagagattgcataacaaaattaaggtttgttttcataggtaagtacataacaccttctctcaggtgcatgcttgg |
33563174 |
T |
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| Q |
213 |
catctgggagcacacacgcttctagttctgacttttggtgaattttgtcaaagttgtcgtttcttatttataatgtatgtgcaggaataatactcttgga |
312 |
Q |
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| T |
33563175 |
catctgggggcacacacgcttctagttctgacttttggtgaattttgtcaaagctgtcgtttcttatttataatgtatgtgcaggaataatactcttgga |
33563274 |
T |
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| Q |
313 |
tggtgtcagt |
322 |
Q |
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| T |
33563275 |
tggtgtcagt |
33563284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 40449953 - 40449850
Alignment:
| Q |
31 |
acattatgcgatgtgagcgcgttcaagtttctggtatctcaagattgaagctcggaagttatgctaattcattgcatgttactttggctccatctgttgc |
130 |
Q |
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| T |
40449953 |
acattttgagatgtgagcttgttcaagtttcttgcatctcaagat-gaaacattgtagttatgctaattcattgcattttactttggctccatctgttgc |
40449855 |
T |
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| Q |
131 |
gattc |
135 |
Q |
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|||| |
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| T |
40449854 |
cattc |
40449850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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