View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_173 (Length: 322)
Name: NF10481A_low_173
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_173 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 128 - 315
Target Start/End: Complemental strand, 17202844 - 17202657
Alignment:
| Q |
128 |
atctaagttatcaattaaaaacttagttaacttttcaataaaataagaacaattcacaacagggatgaaatcacacataatgaagaatattctttcaagt |
227 |
Q |
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| T |
17202844 |
atctaagttatcaattaaaaagtcagttaaattttcaataaaataagagcaattcacaacagggatgaaatcacacataatgaagaatattcttttaagt |
17202745 |
T |
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| Q |
228 |
atgaggcaacttctggctaggctataagtcttccaaagtctaaannnnnnnatatccaaaatgttgatactaatttgcagaataatat |
315 |
Q |
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| T |
17202744 |
atgaggcagcttctggctaggctataagtcttccaaagtctaaatttttttatatccaaaatgttgatactaatttgcagaataatat |
17202657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 17202968 - 17202901
Alignment:
| Q |
1 |
tcatgtctgtttgttcgtttatttacttctataatgatatataaagatgatacactcttttatgttaga |
69 |
Q |
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| T |
17202968 |
tcatgtctgtttgttcgtttatttacttctataatgatatataaagatgatacact-ttttatgttaga |
17202901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 35390490 - 35390538
Alignment:
| Q |
131 |
taagttatcaattaaaaacttagttaacttttcaataaaataagaacaat |
180 |
Q |
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| T |
35390490 |
taagttatcaattaaaaaattagttaa-gtttcattaaaataagaacaat |
35390538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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