View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_176 (Length: 318)
Name: NF10481A_low_176
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_176 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 310
Target Start/End: Complemental strand, 41824434 - 41824132
Alignment:
| Q |
14 |
agatgaaggggtaatgtaacatgacatattaacaatatagcattgcttagttatgtggttattgttatggtttttgaaagactgaagtggtggaaagtat |
113 |
Q |
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| T |
41824434 |
agatgaaggtgtaatgtaacatgacatattaacaatatagcattgcttagttatgtggttattgttatggtttttgaaagactgaagtggtggaaagtat |
41824335 |
T |
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| Q |
114 |
agtcaaaggtagagag--gaaaaagcaaaatggaatagaacgggnnnnnnnnnnnnnn----ggaggtaaaatgtggagggagaataagatgtgtagtgt |
207 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
41824334 |
agtcaaaggtagagagaggaaaaagcaaaatggaatagaacgggttttttttttttttttttggaggtaaaatgtggagggggaataagatgtgtagtgt |
41824235 |
T |
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| Q |
208 |
gtattaaagtatgtatataaagggaagtgaagcaactggttttgtaggtggtgagaaaggaaacagcacatagttttggttagtgtgtgttttggaataa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41824234 |
gtattaaagtatgtatataaagggaagtgaagcaactggttttgtaggtggtgagaaaggaaacagcacatagttttggttagtgtgtgttttggaataa |
41824135 |
T |
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| Q |
308 |
taa |
310 |
Q |
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||| |
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| T |
41824134 |
taa |
41824132 |
T |
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