View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_18 (Length: 487)
Name: NF10481A_low_18
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_18 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 7 - 487
Target Start/End: Original strand, 3332102 - 3332582
Alignment:
| Q |
7 |
ctaaatatatggtcaaaccagaagcagcgggcggagcaggtggtagaagaaacgatccagccagcgaaagaatctcgaaccttccatgaagtgtaacaac |
106 |
Q |
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| T |
3332102 |
ctaaatatatggtcaaaccagaagcagcgggcggagcaggtggtggaagaaacgatccagccagcgaaagaatctcgaaccttccatgaagtgtaacaac |
3332201 |
T |
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| Q |
107 |
agccccaggagaagccggttgccttagtgtcacgtttgtaaccgtccctgtcccactcatgatgcaaacgcctctttgacggcgtctagcaaagttgttg |
206 |
Q |
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| T |
3332202 |
agctccaggagaagccggttgccttagtgtcacgtttgtaaccgtccctgtcccactcatgatgcaaacgcctctttgacggcgtctagcgaagttgttg |
3332301 |
T |
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| Q |
207 |
acactttcaacaacgtcacaaccgtctgcaacttccatcacgtgagttttcaaggcgtttgcgctgtcacgtgtgatgataatcggtggttttggtttgt |
306 |
Q |
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| T |
3332302 |
acactttcaacaacgtcacaaccgtctgcaacttccatcacgtgagttttcaaggcgtttgcgctgtcacgtgtgatgataatcggtggttttggtttgt |
3332401 |
T |
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| Q |
307 |
ttttggacccggctggtcttcctcttggccttcttgtcattgaatcgggttcgccacgggacccccctcctccggattctaccttggggctaaaatctgt |
406 |
Q |
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| T |
3332402 |
ttttggatccagctggtcttcctcttggtcttcttgtcattgaatcggtgtcgccaccggaaccacctcctccggattctaacttggggctaaaatctgt |
3332501 |
T |
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| Q |
407 |
gctgaacttgttgttgctgttttgttctcggtttgtgaggttgagtccaccgccgctgctacttccgctttgttcatcttg |
487 |
Q |
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| T |
3332502 |
gctgaacttgttgttgctgttttcttctcggtttgtgaggttgagtccaccgccgctgctacttccgctttgttcatcttg |
3332582 |
T |
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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 261 - 341
Target Start/End: Original strand, 13212814 - 13212894
Alignment:
| Q |
261 |
gcgtttgcgctgtcacgtgtgatgataatcggtggttttggtttgtttttggacccggctggtcttcctcttggccttctt |
341 |
Q |
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| T |
13212814 |
gcgttcgcgctgtccctcgtgatgatgataggtggttttggtttgtttttcgaacctgctggtcttcctcttggtcttctt |
13212894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 16578665 - 16578617
Alignment:
| Q |
291 |
ggtggttttggtttgtttttggacccggctggtcttcctcttggccttc |
339 |
Q |
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| T |
16578665 |
ggtggttttggtttgttttttgaaccgggtggtcttcctcttggtcttc |
16578617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 32803230 - 32803278
Alignment:
| Q |
291 |
ggtggttttggtttgtttttggacccggctggtcttcctcttggccttc |
339 |
Q |
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| T |
32803230 |
ggtggttttggtctgtttttggatccaggtggtcttcctcttggtcttc |
32803278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 46200964 - 46200932
Alignment:
| Q |
278 |
tgtgatgataatcggtggttttggtttgttttt |
310 |
Q |
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| T |
46200964 |
tgtgatgataataggtggttttggtttgttttt |
46200932 |
T |
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