View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_187 (Length: 314)
Name: NF10481A_low_187
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_187 |
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Alignment Details
Target: chr4 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 193 - 294
Target Start/End: Complemental strand, 24524519 - 24524418
Alignment:
| Q |
193 |
gctagtcctaggggatttgtttgtttctctatggtagccgtttggttttgagcaacgtgtgtgcgctccaactctgtatgtttcacttgtcgtgtagcat |
292 |
Q |
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| T |
24524519 |
gctagtcctaggggatttgtttgtttctctatggtagccgtttggttttgagcaacgtgtgtgcgctccaactttgtatgtttctcttgtcgtgtagcat |
24524420 |
T |
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| Q |
293 |
at |
294 |
Q |
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|| |
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| T |
24524419 |
at |
24524418 |
T |
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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 24524564 - 24524628
Alignment:
| Q |
1 |
caaccacttccaacagcccccaaaacca-gaaaaaagacatccagacggaccactgttctgctgc |
64 |
Q |
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| T |
24524564 |
caaccacttccaacagcccccaaaaccaagaaaaaagacatccagacggaccactgatctgctgc |
24524628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 9122615 - 9122678
Alignment:
| Q |
1 |
caaccacttccaacagcccccaaaaccagaaaaaagacatccagacggaccactgttctgctgc |
64 |
Q |
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| T |
9122615 |
caaccacttccaacagcccccaaaaccagaaaaaagacatccagacggaccactgatctgctgc |
9122678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 9130711 - 9130774
Alignment:
| Q |
1 |
caaccacttccaacagcccccaaaaccagaaaaaagacatccagacggaccactgttctgctgc |
64 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9130711 |
caaccacttccaacagcccccaaaaccagaaaaaagacatccagacggaccactgatctgctgc |
9130774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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