View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_188 (Length: 314)

Name: NF10481A_low_188
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_188
NF10481A_low_188
[»] chr4 (15 HSPs)
chr4 (144-299)||(38147357-38147519)
chr4 (171-293)||(12639721-12639843)
chr4 (179-293)||(28103806-28103920)
chr4 (178-267)||(917683-917772)
chr4 (171-287)||(43012754-43012870)
chr4 (200-287)||(23643431-23643518)
chr4 (200-265)||(12639208-12639273)
chr4 (171-287)||(54714873-54714989)
chr4 (203-265)||(28104360-28104421)
chr4 (203-265)||(919115-919176)
chr4 (171-265)||(43013130-43013224)
chr4 (171-239)||(12629834-12629902)
chr4 (258-289)||(918651-918682)
chr4 (178-239)||(25163430-25163491)
chr4 (251-291)||(23037998-23038038)
[»] chr2 (9 HSPs)
chr2 (172-293)||(4329599-4329720)
chr2 (171-293)||(39865298-39865420)
chr2 (171-293)||(29770766-29770888)
chr2 (159-287)||(30674429-30674557)
chr2 (172-287)||(9074598-9074713)
chr2 (174-265)||(4330136-4330226)
chr2 (183-287)||(9914204-9914308)
chr2 (203-265)||(29771299-29771360)
chr2 (171-265)||(39864768-39864860)
[»] chr3 (10 HSPs)
chr3 (10-143)||(45395426-45395560)
chr3 (171-293)||(23566889-23567011)
chr3 (173-293)||(39737724-39737844)
chr3 (174-287)||(785770-785883)
chr3 (200-287)||(30385749-30385836)
chr3 (203-265)||(39737232-39737293)
chr3 (201-287)||(53153855-53153941)
chr3 (173-265)||(23566432-23566522)
chr3 (27-93)||(50470355-50470421)
chr3 (192-265)||(53153517-53153590)
[»] scaffold0064 (1 HSPs)
scaffold0064 (10-144)||(19917-20052)
[»] chr7 (11 HSPs)
chr7 (171-293)||(31166954-31167076)
chr7 (183-289)||(21971546-21971651)
chr7 (192-275)||(27596002-27596084)
chr7 (168-287)||(28750927-28751045)
chr7 (172-287)||(38916392-38916507)
chr7 (183-287)||(27230474-27230578)
chr7 (170-285)||(15577468-15577578)
chr7 (172-265)||(21972092-21972184)
chr7 (179-287)||(32741787-32741895)
chr7 (172-265)||(38916045-38916138)
chr7 (232-291)||(21948149-21948208)
[»] chr6 (7 HSPs)
chr6 (10-143)||(17922857-17922991)
chr6 (173-287)||(8700890-8701004)
chr6 (200-287)||(12307301-12307388)
chr6 (200-287)||(7727381-7727468)
chr6 (178-287)||(604984-605096)
chr6 (171-265)||(12306970-12307064)
chr6 (171-265)||(8701263-8701357)
[»] chr8 (7 HSPs)
chr8 (175-293)||(26759207-26759325)
chr8 (180-293)||(146644-146757)
chr8 (168-287)||(308301-308420)
chr8 (179-287)||(186682-186790)
chr8 (171-262)||(187049-187140)
chr8 (203-265)||(147190-147251)
chr8 (233-287)||(25277141-25277195)
[»] chr5 (7 HSPs)
chr5 (171-293)||(39121834-39121956)
chr5 (15-143)||(3623465-3623594)
chr5 (179-287)||(14393983-14394091)
chr5 (171-286)||(20983543-20983658)
chr5 (179-287)||(25672272-25672380)
chr5 (174-265)||(20983842-20983933)
chr5 (171-265)||(14394344-14394438)
[»] chr1 (2 HSPs)
chr1 (179-287)||(40888792-40888900)
chr1 (171-239)||(23269946-23270014)


Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 144 - 299
Target Start/End: Original strand, 38147357 - 38147519
Alignment:
Q  144 atttaataatttgggcaatgttaaccag-------gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaatt 236  Q
    |||||||||||||||||||| ||||| |       |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38147357 atttaataatttgggcaatgctaaccggtgctttcgggcactggataaggaacagtaaatagtcaataaataaatggatctcacttaattcatctcaatt 38147456  T
Q  237 aaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaatactctttgatgtc 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38147457 aaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaatactctttgatgtc 38147519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 171 - 293
Target Start/End: Complemental strand, 12639843 - 12639721
Alignment:
Q  171 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 270  Q
    |||| ||||||||||||||| ||||||| |||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  12639843 ggggtactggataaggaacaataaataggcaataaataaatggatctcacttaattcacctcaattaaagtgtaaaatatgtcaactaattaaaaataat 12639744  T
Q  271 aaaagctatattcaatactcttt 293  Q
    |||||||||||||||||||||||    
T  12639743 aaaagctatattcaatactcttt 12639721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 179 - 293
Target Start/End: Original strand, 28103806 - 28103920
Alignment:
Q  179 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 278  Q
    |||||||||||| |||||| ||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28103806 ggataaggaacaataaataatcattaaataaatggatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataataaaagcta 28103905  T
Q  279 tattcaatactcttt 293  Q
    |||||||||||||||    
T  28103906 tattcaatactcttt 28103920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 178 - 267
Target Start/End: Original strand, 917683 - 917772
Alignment:
Q  178 tggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaat 267  Q
    ||||||| ||||| ||||||||||||||||||||  |||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  917683 tggataaagaacaataaatagtcaataaataaatgaatctaagttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaat 917772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 171 - 287
Target Start/End: Original strand, 43012754 - 43012870
Alignment:
Q  171 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 270  Q
    |||||||||||||||||||| ||||||| |||||||||||| ||||||| ||  || | || ||||||||||||| |||| |||||||||||||| ||||    
T  43012754 ggggcactggataaggaacaataaatagacaataaataaatggatctcatttggtttaccttaattaaagtgtaaaatatttcaactaattaaaattaat 43012853  T
Q  271 aaaagctatattcaata 287  Q
    ||| | |||||||||||    
T  43012854 aaatgttatattcaata 43012870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 200 - 287
Target Start/End: Original strand, 23643431 - 23643518
Alignment:
Q  200 caataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 287  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||| |||| |||||||||||||| ||||||| |||||||||||||    
T  23643431 caataaataaattgatctcacttcatttatcttaattaaagtgtaaaatatttcaactaattaaaattaataaatgctatattcaata 23643518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 265
Target Start/End: Original strand, 12639208 - 12639273
Alignment:
Q  200 caataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 265  Q
    |||||||||||| |||||||||||||| | ||||||||| |||||| |||||||||||||||||||    
T  12639208 caataaataaatggatctcacttaatttacctcaattaatgtgtaaaatatgtcaactaattaaaa 12639273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 287
Target Start/End: Complemental strand, 54714989 - 54714873
Alignment:
Q  171 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 270  Q
    |||||| ||||||| ||| |  |||||| |||||||||||| ||| |||||| ||| |||| ||||||||||||| |||| | || ||||||||| ||||    
T  54714989 ggggcattggataaagaataaaaaataggcaataaataaatggatttcacttgatttatcttaattaaagtgtaaaatattttaaataattaaaattaat 54714890  T
Q  271 aaaagctatattcaata 287  Q
    ||| | |||||||||||    
T  54714889 aaatgttatattcaata 54714873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 265
Target Start/End: Complemental strand, 28104421 - 28104360
Alignment:
Q  203 taaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 265  Q
    ||||||||| ||||||||||||||||||||||||||| ||||| |||| ||||||||||||||    
T  28104421 taaataaatggatctcacttaattcatctcaattaaa-tgtaaaatatatcaactaattaaaa 28104360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 265
Target Start/End: Complemental strand, 919176 - 919115
Alignment:
Q  203 taaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 265  Q
    |||||||||  |||||||||||||||||||||||||| ||||| |||| ||||||||||||||    
T  919176 taaataaatgaatctcacttaattcatctcaattaaa-tgtaaaatatatcaactaattaaaa 919115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 265
Target Start/End: Complemental strand, 43013224 - 43013130
Alignment:
Q  171 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 265  Q
    ||||||||||||||| || | ||||||| |||||||||||| ||| ||| ||  || | || ||||||||||  ||||| |||||||||||||||    
T  43013224 ggggcactggataagaaataataaataggcaataaataaatggatttcaattggtttacctaaattaaagtgagatataagtcaactaattaaaa 43013130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 12629834 - 12629902
Alignment:
Q  171 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaa 239  Q
    |||||||||||||||||||| ||||||| |||||||| ||| ||||| || | ||| | ||||||||||    
T  12629834 ggggcactggataaggaacattaaatagacaataaatgaatagatcttacatgatttacctcaattaaa 12629902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 289
Target Start/End: Original strand, 918651 - 918682
Alignment:
Q  258 aattaaaaataataaaagctatattcaatact 289  Q
    ||||||||||||||||||||||||||||||||    
T  918651 aattaaaaataataaaagctatattcaatact 918682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 25163430 - 25163491
Alignment:
Q  178 tggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaa 239  Q
    ||||||||||||| ||||||| |||||||| ||| ||||| |||| ||| | ||||||||||    
T  25163430 tggataaggaacattaaatagacaataaatgaatagatcttactttatttacctcaattaaa 25163491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 23038038 - 23037998
Alignment:
Q  251 gtcaactaattaaaaataataaaagctatattcaatactct 291  Q
    ||||||||||||||| ||||||||| | |||||||||||||    
T  23038038 gtcaactaattaaaattaataaaagttgtattcaatactct 23037998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 8e-58; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 172 - 293
Target Start/End: Original strand, 4329599 - 4329720
Alignment:
Q  172 gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataata 271  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4329599 gggcactggataaggaacagtaaatagttaataaataaatagatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataata 4329698  T
Q  272 aaagctatattcaatactcttt 293  Q
    ||||||||||||||||||||||    
T  4329699 aaagctatattcaatactcttt 4329720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 171 - 293
Target Start/End: Complemental strand, 39865420 - 39865298
Alignment:
Q  171 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 270  Q
    |||||||||||||||||||| |||||||| | |||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39865420 ggggcactggataaggaacaataaatagtaattaaataaatgaatctcacttaattcatctcaattaaagtataatatatgtcaactaattaaaaataat 39865321  T
Q  271 aaaagctatattcaatactcttt 293  Q
    |||||||||||||||||||||||    
T  39865320 aaaagctatattcaatactcttt 39865298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 171 - 293
Target Start/End: Original strand, 29770766 - 29770888
Alignment:
Q  171 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 270  Q
    |||||||||||||||||||| |||||||| | |||||||||  |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  29770766 ggggcactggataaggaacaataaatagtaattaaataaatgaatctcacttaattcatctcagttaaagtataatatatgtcaactaattaaaaataat 29770865  T
Q  271 aaaagctatattcaatactcttt 293  Q
    |||||||||| ||||||||||||    
T  29770866 aaaagctataatcaatactcttt 29770888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 159 - 287
Target Start/End: Complemental strand, 30674557 - 30674429
Alignment:
Q  159 caatgttaaccaggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaacta 258  Q
    ||||| ||||| ||||||| |||||| ||||| | ||||  |||||||||||| |||||||||| ||| |||| ||||||| ||||| |||| |||||||    
T  30674557 caatgctaaccgggggcaccggataaagaacaattaataagcaataaataaatagatctcacttgatttatcttaattaaaatgtaaaatatttcaacta 30674458  T
Q  259 attaaaaataataaaagctatattcaata 287  Q
    ||||||| ||||||| | |||||||||||    
T  30674457 attaaaattaataaatgttatattcaata 30674429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 172 - 287
Target Start/End: Original strand, 9074598 - 9074713
Alignment:
Q  172 gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataata 271  Q
    |||||| |||||| ||||| ||||||| |||||||||||| ||||||||||  || | || ||||||||||||| |||| |||||||||||||| |||||    
T  9074598 gggcaccggataaagaacaataaatagacaataaataaatggatctcacttggtttaccttaattaaagtgtaaaatatttcaactaattaaaattaata 9074697  T
Q  272 aaagctatattcaata 287  Q
    || | |||||||||||    
T  9074698 aatgttatattcaata 9074713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 174 - 265
Target Start/End: Complemental strand, 4330226 - 4330136
Alignment:
Q  174 gcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 265  Q
    ||||||||||||||||| | ||||  || ||||||||| ||||||||||||||||||||||||||| ||||| |||||| ||||||||||||    
T  4330226 gcactggataaggaacaattaatatgcattaaataaatggatctcacttaattcatctcaattaaa-tgtaaaatatgttaactaattaaaa 4330136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 287
Target Start/End: Original strand, 9914204 - 9914308
Alignment:
Q  183 aaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatatt 282  Q
    |||||||| |||||||  |||||||||||  ||||||||| ||| |  | ||||||||||||| |||| |||||||| ||||| ||||||| ||||||||    
T  9914204 aaggaacaataaataggtaataaataaatgaatctcacttgatttactttaattaaagtgtaaaatatttcaactaactaaaattaataaatgctatatt 9914303  T
Q  283 caata 287  Q
    |||||    
T  9914304 caata 9914308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 265
Target Start/End: Complemental strand, 29771360 - 29771299
Alignment:
Q  203 taaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 265  Q
    |||||||||  |||||||||||||||||||||||| | ||||| |||||||||||||||||||    
T  29771360 taaataaatgaatctcacttaattcatctcaattata-tgtaaaatatgtcaactaattaaaa 29771299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 265
Target Start/End: Original strand, 39864768 - 39864860
Alignment:
Q  171 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 265  Q
    ||||||||||||||||| || | ||||  || |||||||||  |||||| |||||||||||||| |||| |||||  |||||||| |||||||||    
T  39864768 ggggcactggataagga-caattaatatgcattaaataaatgaatctcatttaattcatctcaaataaa-tgtaaactatgtcaattaattaaaa 39864860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 10 - 143
Target Start/End: Original strand, 45395426 - 45395560
Alignment:
Q  10 tggacatcaagcggtggaa-ggaaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatagcatcgtgggtttctc 108  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||| |||||||||| |||||| |||||||||||||||    
T  45395426 tggacatcaagcggtggaaaggaaaacatgggatgagagaatataattagttaatggaaagaaaaatatccaaggatggtaataacatcgtgggtttctc 45395525  T
Q  109 gtgcatggtttatgtcgtgtaataaagcattttcc 143  Q
    |||||||||||||||||||||||||||||||||||    
T  45395526 gtgcatggtttatgtcgtgtaataaagcattttcc 45395560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 171 - 293
Target Start/End: Complemental strand, 23567011 - 23566889
Alignment:
Q  171 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 270  Q
    |||||||||||||||||||| |||||||| | |||||||||  || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23567011 ggggcactggataaggaacaataaatagtaattaaataaatgaatatcacttaattcatctcaattaaagtataatatatgtcaactaattaaaaataat 23566912  T
Q  271 aaaagctatattcaatactcttt 293  Q
    |||||||||||||||||||||||    
T  23566911 aaaagctatattcaatactcttt 23566889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 173 - 293
Target Start/End: Complemental strand, 39737844 - 39737724
Alignment:
Q  173 ggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataa 272  Q
    |||||||||||||||||| |||||||| | ||||||||| ||||| | ||||||||||||||||||| | |||||||||| |||||||||||||||||||    
T  39737844 ggcactggataaggaacaataaatagtaattaaataaatagatcttatttaattcatctcaattaaaatataatatatgttaactaattaaaaataataa 39737745  T
Q  273 aagctatattcaatactcttt 293  Q
    ||||||||||||||| |||||    
T  39737744 aagctatattcaatattcttt 39737724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 287
Target Start/End: Complemental strand, 785883 - 785770
Alignment:
Q  174 gcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaa 273  Q
    |||||| |||||||||| ||||||| |||||||||||| |||||||||| ||| | || ||| ||||||||| ||||  ||| ||||||||| ||||||     
T  785883 gcactgaataaggaacattaaataggcaataaataaatggatctcacttgatttaccttaatcaaagtgtaaaatattgcaattaattaaaattaataat 785784  T
Q  274 agctatattcaata 287  Q
     |||||||||||||    
T  785783 tgctatattcaata 785770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 200 - 287
Target Start/End: Complemental strand, 30385836 - 30385749
Alignment:
Q  200 caataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 287  Q
    |||||||||||| ||||||| || ||| | || ||||||||||||| |||| |||||||||||||| ||||||| | |||||||||||    
T  30385836 caataaataaatggatctcatttgatttaccttaattaaagtgtaaaatatttcaactaattaaaattaataaatgatatattcaata 30385749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 265
Target Start/End: Original strand, 39737232 - 39737293
Alignment:
Q  203 taaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 265  Q
    |||||||||  |||||||||||| ||||||||||||| ||||| |||||||||||||||||||    
T  39737232 taaataaatgaatctcacttaatccatctcaattaaa-tgtaaaatatgtcaactaattaaaa 39737293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 201 - 287
Target Start/End: Complemental strand, 53153941 - 53153855
Alignment:
Q  201 aataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 287  Q
    |||||||| ||  ||||||||| ||| | || ||||||||||||| |||| |||||||||||||| ||||||| | |||||||||||    
T  53153941 aataaatagatgaatctcacttgatttaccttaattaaagtgtaaaatatttcaactaattaaaattaataaatgttatattcaata 53153855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 265
Target Start/End: Original strand, 23566432 - 23566522
Alignment:
Q  173 ggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 265  Q
    ||||||||||||| |||| | ||||  || |||||||||  |||| |||||||||||||||| |||| |||||  ||||||||||||||||||    
T  23566432 ggcactggataag-aacaattaatatgcattaaataaataaatcttacttaattcatctcaaataaa-tgtaaactatgtcaactaattaaaa 23566522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 50470355 - 50470421
Alignment:
Q  27 aaggaaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatag 93  Q
    ||||||||||||||| ||||||||  ||||| |||| ||||| | |||||||||| ||| |||||||    
T  50470355 aaggaaaacatggggagagagaattcaattagttaacggaaatataaacatccaaagatggtaatag 50470421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 265
Target Start/End: Original strand, 53153517 - 53153590
Alignment:
Q  192 taaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 265  Q
    ||||||| |||||||||||| ||| ||| ||  || |||| ||||||||||  ||||| |||||||||||||||    
T  53153517 taaataggcaataaataaatggatttcaattggtttatctaaattaaagtgagatataagtcaactaattaaaa 53153590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 19917 - 20052
Alignment:
Q  10 tggacatcaagcggtggaa-ggaaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatagcatcgtgggtttctc 108  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||  ||||| |||||||| ||||||    
T  19917 tggacatcaagcggtggaaaggaaaacatgggatgagagaatataatcaattaatggaaagaaaaacatccaaggatgataataacatcgtggctttctc 20016  T
Q  109 gtgcatggtttatgtcgtgtaataaagcattttcca 144  Q
    ||||||||||||||||||||||||||||||||||||    
T  20017 gtgcatggtttatgtcgtgtaataaagcattttcca 20052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 7e-49; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 171 - 293
Target Start/End: Complemental strand, 31167076 - 31166954
Alignment:
Q  171 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 270  Q
    |||||||||||||||||||| |||||||| | |||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31167076 ggggcactggataaggaacaataaatagtaattaaataaatgaatctcacttaattcatctcaattaaagtataatatatgtcaactaattaaaaataat 31166977  T
Q  271 aaaagctatattcaatactcttt 293  Q
    |||||||||||||||||||||||    
T  31166976 aaaagctatattcaatactcttt 31166954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 183 - 289
Target Start/End: Original strand, 21971546 - 21971651
Alignment:
Q  183 aaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatatt 282  Q
    |||||||| |||||| | | ||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21971546 aaggaacaataaataataattaaataaat-gatctcacttaactcatctcaattaaagtataatatatgtcaactaattaaaaataataaaagctatatt 21971644  T
Q  283 caatact 289  Q
    |||||||    
T  21971645 caatact 21971651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 192 - 275
Target Start/End: Original strand, 27596002 - 27596084
Alignment:
Q  192 taaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaag 275  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27596002 taaatagccaataaataaatggatctcacttaattcatctcaattaaagtgtaatata-gtcaactaattaaaaataataaaag 27596084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 168 - 287
Target Start/End: Complemental strand, 28751045 - 28750927
Alignment:
Q  168 ccaggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaat 267  Q
    ||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||| || | || ||||||||||||| |||| |||||||||||||| |    
T  28751045 ccaggggcactggataaggaacaataaataggcaataaataaatggatctcacttagtttaccttaattaaagtgtaaaatatttcaactaattaaaatt 28750946  T
Q  268 aataaaagctatattcaata 287  Q
    |||||| | |||||||||||    
T  28750945 aataaatg-tatattcaata 28750927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 172 - 287
Target Start/End: Complemental strand, 38916507 - 38916392
Alignment:
Q  172 gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataata 271  Q
    ||||||||||||| ||||| ||||||| |||||||||||| |||||||||| ||| | || ||||||||||||| |||| |||||||||||||| |||||    
T  38916507 gggcactggataaagaacaataaatagacaataaataaatggatctcacttgatttaccttaattaaagtgtaaaatatttcaactaattaaaattaata 38916408  T
Q  272 aaagctatattcaata 287  Q
    || | |||||| ||||    
T  38916407 aatgttatatttaata 38916392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 183 - 287
Target Start/End: Original strand, 27230474 - 27230578
Alignment:
Q  183 aaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatatt 282  Q
    |||||||| | ||||| ||||||||||||  |||||| || ||| | || ||||||||||||| |||| |||||||||||||| ||||||| ||||||||    
T  27230474 aaggaacaattaatagacaataaataaatgaatctcatttgatttaccttaattaaagtgtaaaatatttcaactaattaaaattaataaatgctatatt 27230573  T
Q  283 caata 287  Q
    |||||    
T  27230574 caata 27230578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 285
Target Start/End: Original strand, 15577468 - 15577578
Alignment:
Q  170 aggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataa 269  Q
    ||||||||||||||||||||| ||||||| |||     |||| ||||||||||| || | || ||||||||||||| |||| |||||||||||||| |||    
T  15577468 aggggcactggataaggaacaataaatagacaa-----aaatggatctcacttagtttaccttaattaaagtgtaaaatatttcaactaattaaaattaa 15577562  T
Q  270 taaaagctatattcaa 285  Q
    |||| | |||||||||    
T  15577563 taaatgatatattcaa 15577578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 265
Target Start/End: Complemental strand, 21972184 - 21972092
Alignment:
Q  172 gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 265  Q
    ||||||||||||||||||| | || |  || |||||||||  |||||||||||||||||| ||||||| ||||| |||||||||||||||||||    
T  21972184 gggcactggataaggaacaattaaaatgcattaaataaatgaatctcacttaattcatcttaattaaa-tgtaaaatatgtcaactaattaaaa 21972092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 287
Target Start/End: Complemental strand, 32741895 - 32741787
Alignment:
Q  179 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 278  Q
    |||||| ||||| ||||||  |||||||||||| ||||||||||  || | || ||||||||| ||| |||| ||||||| |||||| ||||||| ||||    
T  32741895 ggataatgaacaataaataagcaataaataaatggatctcacttggtttaccttaattaaagtataaaatatttcaactatttaaaattaataaatgcta 32741796  T
Q  279 tattcaata 287  Q
    |||||||||    
T  32741795 tattcaata 32741787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 172 - 265
Target Start/End: Original strand, 38916045 - 38916138
Alignment:
Q  172 gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 265  Q
    |||||||||||||| || | ||||||| |||||||||||| ||||||| ||  || |||| ||||||||||  ||||| |||||||||||||||    
T  38916045 gggcactggataagaaataataaataggcaataaataaatagatctcaattggtttatctaaattaaagtgagatataagtcaactaattaaaa 38916138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 21948149 - 21948208
Alignment:
Q  232 caattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaatactct 291  Q
    |||| ||| ||||| ||| ||||||||||||||| |||||||| || |||||||||||||    
T  21948149 caatcaaaatgtaaaataagtcaactaattaaaattaataaaaactctattcaatactct 21948208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 10 - 143
Target Start/End: Original strand, 17922857 - 17922991
Alignment:
Q  10 tggacatcaagcggtggaagg--aaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatagcatcgtgggtttct 107  Q
    ||||||||||||||||||| |  |||||||||| ||||||||||||||||  |||||||||||||||||||||||| | |||||||||||||||||||||    
T  17922857 tggacatcaagcggtggaaaggaaaaacatggg-tgagagaatataattagctaatggaaagaaaaacatccaagggtggtaatagcatcgtgggtttct 17922955  T
Q  108 cgtgcatggtttatgtcgtgtaataaagcattttcc 143  Q
    ||||||||||||||||||||||||||||||||||||    
T  17922956 cgtgcatggtttatgtcgtgtaataaagcattttcc 17922991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 173 - 287
Target Start/End: Original strand, 8700890 - 8701004
Alignment:
Q  173 ggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataa 272  Q
    ||||| |||||||||||| ||||||| ||||||||| || |||||||||| ||| | || ||||||||||||| |||| | |||||||||||| ||||||    
T  8700890 ggcaccggataaggaacaataaataggcaataaatagatggatctcacttgatttaccttaattaaagtgtaaaatattttaactaattaaaattaataa 8700989  T
Q  273 aagctatattcaata 287  Q
    | | |||||||||||    
T  8700990 atgttatattcaata 8701004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 200 - 287
Target Start/End: Complemental strand, 12307388 - 12307301
Alignment:
Q  200 caataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 287  Q
    |||||||||||| |||||||||| ||| |||| ||||||||||||| |||| |||||||||||||| ||||||| | |||||||||||    
T  12307388 caataaataaatagatctcacttgatttatcttaattaaagtgtaaaatatttcaactaattaaaattaataaatgttatattcaata 12307301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 200 - 287
Target Start/End: Complemental strand, 7727468 - 7727381
Alignment:
Q  200 caataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 287  Q
    |||||||||||||||||||||||  || | || ||||||||||||| |||| |||||||||||||| ||||||| | |||||||||||    
T  7727468 caataaataaattgatctcacttggtttaccttaattaaagtgtaaaatatttcaactaattaaaattaataaatgttatattcaata 7727381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 178 - 287
Target Start/End: Original strand, 604984 - 605096
Alignment:
Q  178 tggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaac---taattaaaaataataaaa 274  Q
    ||||||||||||| ||||||| |||||||||||| |||||||||| ||| | || ||||||||| ||| |||| |||||   ||||||||| |||||||     
T  604984 tggataaggaacaataaataggcaataaataaatggatctcacttgatttaccttaattaaagtataaaatatttcaactaataattaaaattaataaat 605083  T
Q  275 gctatattcaata 287  Q
    | |||||||||||    
T  605084 gttatattcaata 605096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 265
Target Start/End: Original strand, 12306970 - 12307064
Alignment:
Q  171 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 265  Q
    ||||||||||||||| || | ||||||| ||||||||||||  |||| | || ||| | || ||||||||||  ||||| |||||||||||||||    
T  12306970 ggggcactggataagaaataataaatagacaataaataaatgaatcttaattgatttacctaaattaaagtgagatataagtcaactaattaaaa 12307064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 265
Target Start/End: Complemental strand, 8701357 - 8701263
Alignment:
Q  171 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 265  Q
    |||||||||| |||| || | ||||||| ||||||||||||  |||||| || ||| |  | ||||||||||  ||||| |||||||||||||||    
T  8701357 ggggcactggttaagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtgatatataagtcaactaattaaaa 8701263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 175 - 293
Target Start/End: Original strand, 26759207 - 26759325
Alignment:
Q  175 cactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaa 274  Q
    |||||||||||||||| |||||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  26759207 cactggataaggaacaataaatagtaattaaataaatggatctcacttaattcatctcaattaaagtataatatatgccaactaattaaaaataataaaa 26759306  T
Q  275 gctatattcaatactcttt 293  Q
    |||||||| ||||||||||    
T  26759307 gctatattaaatactcttt 26759325  T

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Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 180 - 293
Target Start/End: Original strand, 146644 - 146757
Alignment:
Q  180 gataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctat 279  Q
    ||||| ||||| ||||||| || ||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  146644 gataatgaacaataaatagccattaaataaatggatctcactttattaatctcaattaaagtgtaatatatgtcaactaattaaaattaataaaaactat 146743  T
Q  280 attcaatactcttt 293  Q
    ||||||||||||||    
T  146744 attcaatactcttt 146757  T

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Target: chr8; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 168 - 287
Target Start/End: Original strand, 308301 - 308420
Alignment:
Q  168 ccaggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaat 267  Q
    |||||||||| |||||| ||||| ||||||| |||||||||||| ||||||||||| || | || ||||||||||||| |||| |||||||||||||| |    
T  308301 ccaggggcaccggataatgaacaataaataggcaataaataaatggatctcacttagtttaccttaattaaagtgtaaaatatttcaactaattaaaatt 308400  T
Q  268 aataaaagctatattcaata 287  Q
    |||||| | |||||||||||    
T  308401 aataaatgttatattcaata 308420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 179 - 287
Target Start/End: Original strand, 186682 - 186790
Alignment:
Q  179 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 278  Q
    |||||||||||| |||||||  ||||||||||| |||||||||| ||| |||| ||||||| ||||| |||| |||||||||||||| ||||||| | ||    
T  186682 ggataaggaacaataaatagctaataaataaatggatctcacttgatttatcttaattaaattgtaaaatatttcaactaattaaaattaataaatgtta 186781  T
Q  279 tattcaata 287  Q
    |||||||||    
T  186782 tattcaata 186790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 262
Target Start/End: Complemental strand, 187140 - 187049
Alignment:
Q  171 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaatta 262  Q
    ||||||||||||||| || | ||||||| ||||||||||||  |||||| ||| || | || ||||||||||  ||||| ||||||||||||    
T  187140 ggggcactggataagaaataataaataggcaataaataaatgaatctcaattagtttacctaaattaaagtgagatataagtcaactaatta 187049  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 265
Target Start/End: Complemental strand, 147251 - 147190
Alignment:
Q  203 taaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 265  Q
    |||||| || ||||||||||||||||||| ||||||| | ||| |||||||||||||||||||    
T  147251 taaatatatggatctcacttaattcatcttaattaaa-tataaaatatgtcaactaattaaaa 147190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 287
Target Start/End: Complemental strand, 25277195 - 25277141
Alignment:
Q  233 aattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 287  Q
    ||||||||||| | |||| | |||||||||||| ||||||| |||||||||||||    
T  25277195 aattaaagtgtgaaatattttaactaattaaaattaataaatgctatattcaata 25277141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 171 - 293
Target Start/End: Complemental strand, 39121956 - 39121834
Alignment:
Q  171 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 270  Q
    |||||||||||||||||||| |||||||| | |||||||||  ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  39121956 ggggcactggataaggaacaataaatagtaattaaataaatgaatctcacttaatttatctcaattaaagtataatatatgtcaactaattaaaaataat 39121857  T
Q  271 aaaagctatattcaatactcttt 293  Q
    ||||| |||||||||||||||||    
T  39121856 aaaagttatattcaatactcttt 39121834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 3623465 - 3623594
Alignment:
Q  15 atcaagcggtggaa-ggaaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatagcatcgtgggtttctcgtgca 113  Q
    |||||||| ||||| |||||| |||||||||||||||||||||| |||||||||| |||||||||||||| | |||||||| | ||||| ||||||||||    
T  3623465 atcaagcgatggaaaggaaaatatggggtgagagaatataattagttaatggaaataaaaacatccaagggtggtaatagctttgtgggcttctcgtgca 3623564  T
Q  114 tggtttatgtcgtgtaataaagcattttcc 143  Q
    |||||| | ||||  |||||||||||||||    
T  3623565 tggtttctatcgtcaaataaagcattttcc 3623594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 179 - 287
Target Start/End: Original strand, 14393983 - 14394091
Alignment:
Q  179 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 278  Q
    |||||||||||| ||||||  |||||||||||| |||||||||| ||| |||| ||||||| ||||| |||| |||||||||||||  ||||||| ||||    
T  14393983 ggataaggaacaataaataagcaataaataaatggatctcacttgatttatcttaattaaaatgtaaaatatttcaactaattaaatttaataaatgcta 14394082  T
Q  279 tattcaata 287  Q
    |||||||||    
T  14394083 tattcaata 14394091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 171 - 286
Target Start/End: Original strand, 20983543 - 20983658
Alignment:
Q  171 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 270  Q
    ||||||||||||||| || | ||||||| |||||||||||| ||||||| ||  || | || ||||||||||||| |||| |||||||||||||| ||||    
T  20983543 ggggcactggataagaaaaaataaatagacaataaataaatggatctcatttggtttaccttaattaaagtgtaaaatatttcaactaattaaaattaat 20983642  T
Q  271 aaaagctatattcaat 286  Q
    ||| | ||||||||||    
T  20983643 aaatgttatattcaat 20983658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 179 - 287
Target Start/End: Original strand, 25672272 - 25672380
Alignment:
Q  179 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 278  Q
    |||||||||||| | ||||  |||||||||||| ||||||||||  || || | ||||||||||||| |||| |||||||||||||| ||||||| ||||    
T  25672272 ggataaggaacaatgaatatgcaataaataaatggatctcacttggtttatattaattaaagtgtaaaatatttcaactaattaaaattaataaatgcta 25672371  T
Q  279 tattcaata 287  Q
    |||| ||||    
T  25672372 tatttaata 25672380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 265
Target Start/End: Complemental strand, 20983933 - 20983842
Alignment:
Q  174 gcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 265  Q
    |||||||||||| || | ||||||| |||||||||||| ||| ||| ||  || | || ||||||||||  ||||| |||||||||||||||    
T  20983933 gcactggataagaaataataaataggcaataaataaatggatttcaattggtttacctaaattaaagtgagatataagtcaactaattaaaa 20983842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 265
Target Start/End: Complemental strand, 14394438 - 14394344
Alignment:
Q  171 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 265  Q
    ||||||||| ||||| || | ||||||| ||||||||||||  |||||| ||  || | || ||||||||||  ||||| |||||||||||||||    
T  14394438 ggggcactgaataagaaataataaatagacaataaataaatgaatctcaattggtttacctaaattaaagtgagatataagtcaactaattaaaa 14394344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 287
Target Start/End: Original strand, 40888792 - 40888900
Alignment:
Q  179 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 278  Q
    ||||||| |||| | ||||| ||||| |||||| ||||| |||| ||| |||| ||||||||||||| |||| |||||||||||||| ||||||| ||||    
T  40888792 ggataagaaacaattaataggcaatacataaatggatctaacttgatttatcttaattaaagtgtaaaatatttcaactaattaaaattaataaatgcta 40888891  T
Q  279 tattcaata 287  Q
    |||||||||    
T  40888892 tattcaata 40888900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 23269946 - 23270014
Alignment:
Q  171 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaa 239  Q
    |||||||||||||||||||| ||||||| |||||||| ||| ||||| |||| ||| | ||||||||||    
T  23269946 ggggcactggataaggaacattaaatagacaataaatgaatagatcttacttgatttacctcaattaaa 23270014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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