View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_194 (Length: 312)

Name: NF10481A_low_194
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_194
NF10481A_low_194
[»] chr3 (23 HSPs)
chr3 (162-238)||(24357411-24357487)
chr3 (4-175)||(24357231-24357392)
chr3 (252-306)||(24357567-24357621)
chr3 (152-228)||(19115453-19115529)
chr3 (93-135)||(42886880-42886922)
chr3 (90-135)||(3985992-3986037)
chr3 (152-233)||(42886811-42886892)
chr3 (152-238)||(42571536-42571622)
chr3 (90-135)||(19115517-19115562)
chr3 (90-135)||(44064429-44064474)
chr3 (152-238)||(50038178-50038264)
chr3 (94-135)||(4759421-4759462)
chr3 (90-135)||(42571503-42571548)
chr3 (90-135)||(45460797-45460842)
chr3 (152-200)||(4759385-4759433)
chr3 (192-238)||(24356936-24356982)
chr3 (152-198)||(45460763-45460809)
chr3 (90-135)||(11337586-11337631)
chr3 (15-52)||(20028617-20028654)
chr3 (90-135)||(50038146-50038190)
chr3 (18-70)||(3986027-3986079)
chr3 (89-137)||(30680786-30680834)
chr3 (18-54)||(54918276-54918312)
[»] chr4 (27 HSPs)
chr4 (152-238)||(51733508-51733594)
chr4 (152-226)||(4505405-4505479)
chr4 (90-135)||(7905977-7906022)
chr4 (90-137)||(51733475-51733522)
chr4 (152-238)||(22220373-22220459)
chr4 (90-135)||(4505467-4505512)
chr4 (152-228)||(21864397-21864473)
chr4 (152-228)||(21920258-21920334)
chr4 (152-228)||(37624623-37624699)
chr4 (90-135)||(22220340-22220385)
chr4 (90-135)||(36558270-36558315)
chr4 (90-135)||(37624687-37624732)
chr4 (152-228)||(52915556-52915632)
chr4 (152-238)||(7906010-7906096)
chr4 (89-135)||(38510225-38510271)
chr4 (90-135)||(21864364-21864409)
chr4 (90-135)||(21920225-21920270)
chr4 (90-135)||(25231306-25231351)
chr4 (90-135)||(52915523-52915568)
chr4 (188-228)||(9809673-9809713)
chr4 (167-227)||(25231243-25231303)
chr4 (90-137)||(28308855-28308902)
chr4 (18-52)||(30261455-30261489)
chr4 (90-135)||(43337728-43337773)
chr4 (188-228)||(9811334-9811374)
chr4 (152-228)||(38510259-38510335)
chr4 (167-203)||(43337776-43337812)
[»] chr2 (23 HSPs)
chr2 (152-238)||(35799259-35799345)
chr2 (152-227)||(45423686-45423761)
chr2 (152-238)||(16463042-16463128)
chr2 (152-238)||(17695835-17695921)
chr2 (89-135)||(35799333-35799379)
chr2 (89-135)||(5717643-5717689)
chr2 (89-135)||(22620310-22620356)
chr2 (152-238)||(43427297-43427383)
chr2 (152-228)||(5717579-5717655)
chr2 (90-135)||(27986169-27986214)
chr2 (90-135)||(28072701-28072746)
chr2 (90-135)||(32022877-32022922)
chr2 (152-228)||(27986105-27986181)
chr2 (152-228)||(28072637-28072713)
chr2 (152-206)||(14286020-14286074)
chr2 (105-135)||(16463024-16463054)
chr2 (152-197)||(16792584-16792629)
chr2 (90-135)||(17695802-17695847)
chr2 (189-238)||(18719479-18719528)
chr2 (90-135)||(43427265-43427309)
chr2 (90-135)||(45423749-45423794)
chr2 (189-233)||(7028859-7028903)
chr2 (174-238)||(45301822-45301886)
[»] chr1 (33 HSPs)
chr1 (152-238)||(50249367-50249453)
chr1 (152-233)||(14373421-14373502)
chr1 (152-238)||(12591090-12591176)
chr1 (89-135)||(34032054-34032100)
chr1 (90-135)||(50249441-50249486)
chr1 (152-228)||(34032088-34032164)
chr1 (152-238)||(26352089-26352175)
chr1 (152-233)||(12484636-12484717)
chr1 (90-135)||(14373388-14373433)
chr1 (90-135)||(30293467-30293512)
chr1 (90-135)||(34047208-34047253)
chr1 (90-135)||(39125734-39125779)
chr1 (90-135)||(44257656-44257701)
chr1 (90-135)||(52023948-52023993)
chr1 (152-238)||(27721015-27721101)
chr1 (89-135)||(44557033-44557079)
chr1 (90-135)||(14593320-14593365)
chr1 (90-135)||(26352056-26352101)
chr1 (152-228)||(44257689-44257765)
chr1 (92-135)||(12591059-12591102)
chr1 (152-203)||(14593353-14593404)
chr1 (152-227)||(41857382-41857457)
chr1 (95-129)||(11799608-11799642)
chr1 (152-238)||(25487145-25487231)
chr1 (89-135)||(27721089-27721135)
chr1 (89-135)||(27721204-27721250)
chr1 (152-233)||(30293397-30293479)
chr1 (92-137)||(5672-5717)
chr1 (90-135)||(8894980-8895025)
chr1 (90-135)||(12484603-12484648)
chr1 (189-238)||(16757239-16757288)
chr1 (105-137)||(11449678-11449710)
chr1 (152-228)||(49402879-49402955)
[»] chr8 (15 HSPs)
chr8 (162-238)||(37559553-37559629)
chr8 (152-233)||(39765870-39765951)
chr8 (152-238)||(15160456-15160542)
chr8 (90-135)||(15160423-15160468)
chr8 (89-136)||(43724512-43724559)
chr8 (90-135)||(396191-396236)
chr8 (152-233)||(17655969-17656050)
chr8 (152-228)||(43724449-43724525)
chr8 (152-229)||(396224-396301)
chr8 (90-135)||(1511632-1511677)
chr8 (90-135)||(39765837-39765882)
chr8 (152-233)||(40362497-40362578)
chr8 (90-137)||(12339853-12339898)
chr8 (90-135)||(40399844-40399889)
chr8 (90-135)||(41679453-41679498)
[»] chr7 (35 HSPs)
chr7 (152-233)||(42285970-42286051)
chr7 (152-228)||(18292402-18292478)
chr7 (152-228)||(31883851-31883927)
chr7 (89-135)||(47187793-47187839)
chr7 (90-135)||(6747357-6747402)
chr7 (90-135)||(12977661-12977706)
chr7 (90-135)||(12983119-12983164)
chr7 (90-135)||(18292466-18292511)
chr7 (152-233)||(37502381-37502462)
chr7 (90-135)||(42286039-42286084)
chr7 (152-228)||(2297110-2297186)
chr7 (152-228)||(12977694-12977770)
chr7 (166-238)||(31929882-31929954)
chr7 (152-228)||(44567049-44567125)
chr7 (152-238)||(715871-715957)
chr7 (152-238)||(6747283-6747369)
chr7 (152-238)||(18270635-18270721)
chr7 (90-135)||(2297174-2297219)
chr7 (90-135)||(31883915-31883960)
chr7 (90-135)||(34274925-34274970)
chr7 (152-203)||(12983152-12983203)
chr7 (152-238)||(34274851-34274937)
chr7 (90-135)||(715838-715883)
chr7 (90-135)||(18270709-18270754)
chr7 (189-238)||(31196627-31196676)
chr7 (90-135)||(37502450-37502495)
chr7 (90-135)||(40339600-40339645)
chr7 (152-201)||(40927254-40927303)
chr7 (89-135)||(7900070-7900116)
chr7 (89-135)||(19303358-19303404)
chr7 (152-238)||(25440929-25441015)
chr7 (90-135)||(4268794-4268839)
chr7 (90-135)||(25441003-25441048)
chr7 (90-131)||(31929834-31929875)
chr7 (172-228)||(18528516-18528572)
[»] chr5 (15 HSPs)
chr5 (152-233)||(43584386-43584467)
chr5 (152-238)||(7317085-7317171)
chr5 (152-238)||(10344942-10345028)
chr5 (89-135)||(35765876-35765922)
chr5 (90-135)||(7317159-7317204)
chr5 (90-135)||(10344909-10344954)
chr5 (152-233)||(25362810-25362891)
chr5 (90-135)||(32158673-32158718)
chr5 (152-228)||(35765910-35765986)
chr5 (90-135)||(3024908-3024953)
chr5 (152-238)||(3024941-3025027)
chr5 (90-131)||(25362777-25362818)
chr5 (90-135)||(43584353-43584398)
chr5 (90-135)||(13974415-13974460)
chr5 (189-238)||(34534416-34534465)
[»] scaffold0332 (2 HSPs)
scaffold0332 (152-238)||(3820-3906)
scaffold0332 (90-135)||(3787-3832)
[»] chr6 (12 HSPs)
chr6 (90-135)||(4850472-4850517)
chr6 (90-135)||(29400076-29400121)
chr6 (152-228)||(4850505-4850581)
chr6 (152-231)||(19689394-19689473)
chr6 (89-136)||(19689460-19689507)
chr6 (90-135)||(32429418-32429463)
chr6 (90-135)||(13503810-13503855)
chr6 (102-135)||(13597932-13597965)
chr6 (90-135)||(1502719-1502764)
chr6 (90-135)||(13011314-13011359)
chr6 (166-203)||(19689250-19689287)
chr6 (152-228)||(32429351-32429430)
[»] scaffold0565 (1 HSPs)
scaffold0565 (18-54)||(9877-9913)


Alignment Details
Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 24357411 - 24357487
Alignment:
Q  162 tattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaagggcacaa 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  24357411 tattcttattaactattggttaattttaaaaataatactttgaaattggtgtccatagtattaattgaagggtacaa 24357487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 4 - 175
Target Start/End: Original strand, 24357231 - 24357392
Alignment:
Q  4 attattcttcatccgtttcaaaatgattatcgtttaaagtttttacacatactacgaaatgcaatgannnnnnnnnnnnngttacaaaatgcaatgatta 103  Q
    |||||| |||||  |||||||||| | | |||||||||||||| ||||||||| |||||||||||||             ||||||||||||||||||||    
T  24357231 attatttttcatttgtttcaaaataaatgtcgtttaaagttttcacacatactgcgaaatgcaatgatttttttttt---gttacaaaatgcaatgatta 24357327  T
Q  104 aaagaaagagaattgttattttaccaaattattcnnnnnnnaaagaagtttaccaaactattcttattaact 175  Q
    ||||||||||||||||||||||||||||| |||        |||||||||||||||| ||||||||||||||    
T  24357328 aaagaaagagaattgttattttaccaaatgatt-------aaaagaagtttaccaaattattcttattaact 24357392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 252 - 306
Target Start/End: Original strand, 24357567 - 24357621
Alignment:
Q  252 aagggacactcattttaaaatgatgagagtaacttatgtccccatacatataaat 306  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  24357567 aagggacacttattttaaaatgaagagagtaacttatgtccccatacatataaat 24357621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 19115529 - 19115453
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattg 228  Q
    ||||||||| ||| |||||||||||||||||| |||||||| |||||||||| || | ||||||| |||||||||||    
T  19115529 tttaccaaattatccttattaactattggttagttttaaaagtaatactttggaagtagtgtgcagagtattaattg 19115453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 135
Target Start/End: Complemental strand, 42886922 - 42886880
Alignment:
Q  93 tgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  42886922 tgcaatgattaaaagaaagagaattgttattttaccaaattat 42886880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 3986037 - 3985992
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  3986037 aaatgcaatgattaaaagaaagagaatttttattttaccaaattat 3985992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 42886892 - 42886811
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaaggg 233  Q
    ||||||||| ||| |||||||||||||| ||| |||||||| |||||||||| || | ||||||||| ||||||||| ||||    
T  42886892 tttaccaaattatccttattaactattgattagttttaaaagtaatactttggaagtagtgtgcataatattaattggaggg 42886811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 42571536 - 42571622
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaagggcacaa 238  Q
    |||| |||| ||| ||||||| |||||||||| |||||||| |||||||||| || | ||||||| ||||||||||| |||| ||||    
T  42571536 tttatcaaattatccttattagctattggttagttttaaaagtaatactttggaagtagtgtgcagagtattaattggagggtacaa 42571622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 19115562 - 19115517
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||    
T  19115562 aaatgcaatgattaaaagaaaaagaatggttattttaccaaattat 19115517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 44064429 - 44064474
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||||||||||||||||||||||||||  |||||||||||||||||    
T  44064429 aaatgcaatgattaaaagaaagagaatgattattttaccaaattat 44064474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 50038178 - 50038264
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaagggcacaa 238  Q
    ||||||||| ||| |||||||| ||||| ||| |||||||| |||||||||  || | ||||||| ||||||||||| |||| ||||    
T  50038178 tttaccaaattatccttattaaatattgcttagttttaaaagtaatactttagaagtagtgtgcagagtattaattggagggtacaa 50038264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 4759462 - 4759421
Alignment:
Q  94 gcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||||||||||||||||| |||| ||||||||||||||||||    
T  4759462 gcaatgattaaaagaaagcgaatggttattttaccaaattat 4759421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 42571503 - 42571548
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||||||    
T  42571503 aaatgcaatgattaaaagatagagaatggttattttatcaaattat 42571548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 45460842 - 45460797
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||||||| |||||||||||| | ||||||||||||||||||||||    
T  45460842 aaatgcaaagattaaaagaaataaaattgttattttaccaaattat 45460797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 4759433 - 4759385
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatact 200  Q
    ||||||||| ||| |||||||||||||||||| |||||||| |||||||    
T  4759433 tttaccaaattatccttattaactattggttagttttaaaagtaatact 4759385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 24356936 - 24356982
Alignment:
Q  192 aataatactttgaaattggtgtgcatagtattaattgaagggcacaa 238  Q
    ||||||||||||||| || |||||||| |||||||||||||| ||||    
T  24356936 aataatactttgaaagtgatgtgcataatattaattgaagggtacaa 24356982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 45460809 - 45460763
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataata 198  Q
    ||||||||| ||| |||||||||||||||||| |||||||| |||||    
T  45460809 tttaccaaattatccttattaactattggttagttttaaaagtaata 45460763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 11337586 - 11337631
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||||||||||||| ||||||| |||| || |||||||||||||||    
T  11337586 aaatgcaatgattagaagaaagggaatagtaattttaccaaattat 11337631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 20028654 - 20028617
Alignment:
Q  15 tccgtttcaaaatgattatcgtttaaagtttttacaca 52  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  20028654 tccgtttcaaaatgaatatcgtttaaattttttacaca 20028617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 50038146 - 50038190
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||||||||||||||||| ||||||||  |||||||||||||||||    
T  50038146 aaatgcaatgattaaaag-aagagaatgattattttaccaaattat 50038190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 3986079 - 3986027
Alignment:
Q  18 gtttcaaaatgattatcgtttaaagtttttacacatactacgaaatgcaatga 70  Q
    |||||||||||| | |||||||| ||||||||||| | || ||||||||||||    
T  3986079 gtttcaaaatgaatgtcgtttaaggtttttacacacattaagaaatgcaatga 3986027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 30680786 - 30680834
Alignment:
Q  89 aaaatgcaatgattaaaagaaagagaattgttattttaccaaattattc 137  Q
    |||||| | ||||||||||||| |||  |||||||||||||||||||||    
T  30680786 aaaatgtattgattaaaagaaaaagagatgttattttaccaaattattc 30680834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 54918312 - 54918276
Alignment:
Q  18 gtttcaaaatgattatcgtttaaagtttttacacata 54  Q
    |||||||||||| |||||||||| |||||||||||||    
T  54918312 gtttcaaaatgagtatcgtttaaggtttttacacata 54918276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 51733508 - 51733594
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaagggcacaa 238  Q
    ||||||||| |||||||||||||||||||||| |||||||| |||||||||| || | ||||||| ||||||||||| |||| ||||    
T  51733508 tttaccaaattattcttattaactattggttagttttaaaagtaatactttggaagtagtgtgcagagtattaattggagggtacaa 51733594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 152 - 226
Target Start/End: Complemental strand, 4505479 - 4505405
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaat 226  Q
    ||||||||| ||| |||||||||||||||||| |||||||| ||||||||||||| | ||||||| |||||||||    
T  4505479 tttaccaaattatccttattaactattggttagttttaaaactaatactttgaaagtagtgtgcagagtattaat 4505405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 7905977 - 7906022
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  7905977 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 7906022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 51733475 - 51733522
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattattc 137  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  51733475 aaatgcaatgattaaaagaaagagaatggttattttaccaaattattc 51733522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 22220373 - 22220459
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaagggcacaa 238  Q
    ||||||||| ||| ||||||| |||||||||| |||||||| ||||| |||| || | ||||||||||||||||||| |||| ||||    
T  22220373 tttaccaaattatccttattagctattggttagttttaaaagtaatattttggaagtagtgtgcatagtattaattggagggtacaa 22220459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 4505512 - 4505467
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  4505512 aaatgcaatgattaaaagaaagagaatggttattttaccaaattat 4505467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 21864397 - 21864473
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattg 228  Q
    ||||||||| ||| |||||||| ||||||||| |||||||| |||||||||| || | ||||||| |||||||||||    
T  21864397 tttaccaaattatccttattaattattggttagttttaaaagtaatactttggaagtagtgtgcagagtattaattg 21864473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 21920258 - 21920334
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattg 228  Q
    ||||||||| ||| |||||||| ||||||||| |||||||| |||||||||| || | ||||||| |||||||||||    
T  21920258 tttaccaaattatccttattaattattggttagttttaaaagtaatactttggaagtagtgtgcagagtattaattg 21920334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 37624699 - 37624623
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattg 228  Q
    ||||||||| ||| |||||||| ||||||||| ||||||||||||||||||  || | ||||||| |||||||||||    
T  37624699 tttaccaaattatccttattaattattggttagttttaaaaataatacttttgaagtagtgtgcagagtattaattg 37624623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 22220340 - 22220385
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||    
T  22220340 aaatgcaatgattaaaagaatgagaatggttattttaccaaattat 22220385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 36558270 - 36558315
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||    
T  36558270 aaatgcaatgattaaaagaaagataatttttattttaccaaattat 36558315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 37624732 - 37624687
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||||||||||||||||||||||||||  |||||||||||||||||    
T  37624732 aaatgcaatgattaaaagaaagagaatgattattttaccaaattat 37624687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 52915556 - 52915632
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattg 228  Q
    ||||||||| |||  |||||| |||||||||| |||||||| |||||||||| || | ||||||| |||||||||||    
T  52915556 tttaccaaattatctttattagctattggttagttttaaaagtaatactttggaagtagtgtgcagagtattaattg 52915632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 7906010 - 7906096
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaagggcacaa 238  Q
    ||||||||| ||| ||||||||||||| |||| |||||||| |||||||||| ||   |||| || ||||||||||| |||| ||||    
T  7906010 tttaccaaattatccttattaactatttgttagttttaaaagtaatactttggaagcagtgtccagagtattaattggagggtacaa 7906096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 38510225 - 38510271
Alignment:
Q  89 aaaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||||||||||||||||||||| ||||  ||||||||||||||||||    
T  38510225 aaaatgcaatgattaaaagaaaaagaaaggttattttaccaaattat 38510271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 21864364 - 21864409
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||| ||||||||||||||||||||||  |||||||||||||||||    
T  21864364 aaatacaatgattaaaagaaagagaatgattattttaccaaattat 21864409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 21920225 - 21920270
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||| ||||||||||||||||||||||  |||||||||||||||||    
T  21920225 aaatacaatgattaaaagaaagagaatgattattttaccaaattat 21920270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 25231351 - 25231306
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||||||||||||||||||||||||||  |||||||| ||||||||    
T  25231351 aaatgcaatgattaaaagaaagagaatgattattttatcaaattat 25231306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 52915523 - 52915568
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||| ||||||||||||||||||||||  |||||||||||||||||    
T  52915523 aaatacaatgattaaaagaaagagaatgattattttaccaaattat 52915568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 9809673 - 9809713
Alignment:
Q  188 taaaaataatactttgaaattggtgtgcatagtattaattg 228  Q
    ||||||||||||||||||| | |||||||||||||||||||    
T  9809673 taaaaataatactttgaaagtagtgtgcatagtattaattg 9809713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 25231303 - 25231243
Alignment:
Q  167 ttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaatt 227  Q
    |||||||||||||||||| ||||||| |||||||||| || | |||| || ||||||||||    
T  25231303 ttattaactattggttaagtttaaaagtaatactttggaagtagtgtacaaagtattaatt 25231243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 28308902 - 28308855
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattattc 137  Q
    ||||||||||||||||||||||| || | |||||||| ||||||||||    
T  28308902 aaatgcaatgattaaaagaaagataaatattattttatcaaattattc 28308855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 30261489 - 30261455
Alignment:
Q  18 gtttcaaaatgattatcgtttaaagtttttacaca 52  Q
    |||||||||||| ||||||||||||||||||||||    
T  30261489 gtttcaaaatgaatatcgtttaaagtttttacaca 30261455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 43337728 - 43337773
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||| ||||||||||||||||||||||  |||||||| ||||||||    
T  43337728 aaatacaatgattaaaagaaagagaatgattattttatcaaattat 43337773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 9811334 - 9811374
Alignment:
Q  188 taaaaataatactttgaaattggtgtgcatagtattaattg 228  Q
    ||||| ||||||||||||| | |||||||||||||||||||    
T  9811334 taaaagtaatactttgaaagtagtgtgcatagtattaattg 9811374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 38510259 - 38510335
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattg 228  Q
    ||||||||| |||  ||||||  ||||||||| |||||||| |||||||||| || | ||||| | |||||||||||    
T  38510259 tttaccaaattataattattagttattggttagttttaaaagtaatactttggaagtagtgtgtagagtattaattg 38510335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 43337776 - 43337812
Alignment:
Q  167 ttattaactattggttaattttaaaaataatactttg 203  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  43337776 ttattaactattggttagttttaaaagtaatactttg 43337812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 35799345 - 35799259
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaagggcacaa 238  Q
    ||||||||| ||| |||||||||||||||||| |||||||| ||||||||||||| | ||||||||| ||||||||| |||| ||||    
T  35799345 tttaccaaattatccttattaactattggttagttttaaaagtaatactttgaaagtagtgtgcataatattaattggagggtacaa 35799259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 45423761 - 45423686
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaatt 227  Q
    ||||||||| ||| |||||||| ||||||||| |||||||| |||||||||| || | ||||||||||||||||||    
T  45423761 tttaccaaattatccttattaattattggttagttttaaaactaatactttggaagtagtgtgcatagtattaatt 45423686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 16463042 - 16463128
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaagggcacaa 238  Q
    ||||||||| ||| ||| |||||||||||||| |||||||| |||||||||| || | |||||||  ||||||||||||||| ||||    
T  16463042 tttaccaaattatccttgttaactattggttagttttaaaagtaatactttggaagtagtgtgcagggtattaattgaagggtacaa 16463128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 17695835 - 17695921
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaagggcacaa 238  Q
    ||||||||| |||  ||||||||||||||||| |||||||| |||||||||| || | ||||||| ||||||||||| |||| ||||    
T  17695835 tttaccaaattatctttattaactattggttagttttaaaagtaatactttggaagtagtgtgcagagtattaattggagggtacaa 17695921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 35799379 - 35799333
Alignment:
Q  89 aaaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  35799379 aaaatgcaatgattaaaagaaagagaatggttattttaccaaattat 35799333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 5717689 - 5717643
Alignment:
Q  89 aaaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||    
T  5717689 aaaatgcaatgattaaaagaaagagaatgattattttaccaaattat 5717643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 22620310 - 22620356
Alignment:
Q  89 aaaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||    
T  22620310 aaaatgcaatgattaaaagaaagagaatggttattttactaaattat 22620356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 43427297 - 43427383
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaagggcacaa 238  Q
    ||||||||| ||| ||||||| ||||| |||| ||||||||||||||||||| || | | ||||| ||||||||||| |||| ||||    
T  43427297 tttaccaaattatccttattagctattagttagttttaaaaataatactttggaagtagcgtgcaaagtattaattggagggtacaa 43427383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 5717655 - 5717579
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattg 228  Q
    ||||||||| ||| |||||||| ||||||||| |||||||| |||||||||| || | ||||| | |||||||||||    
T  5717655 tttaccaaattatccttattaaatattggttagttttaaaagtaatactttggaagtagtgtgtagagtattaattg 5717579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 27986214 - 27986169
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||||||    
T  27986214 aaatgcaattattaaaataaagagaatggttattttaccaaattat 27986169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 28072746 - 28072701
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||||||    
T  28072746 aaatgcaattattaaaataaagagaatggttattttaccaaattat 28072701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 32022877 - 32022922
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||| |||||||||||||||||||||  |||||||||||||||||    
T  32022877 aaatgtaatgattaaaagaaagagaatgattattttaccaaattat 32022922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 27986181 - 27986105
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattg 228  Q
    ||||||||| ||| ||||||| |||||| ||| |||||||| |||||||||| || | ||||| | |||||||||||    
T  27986181 tttaccaaattatccttattagctattgattagttttaaaagtaatactttggaagtagtgtgaagagtattaattg 27986105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 28072713 - 28072637
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattg 228  Q
    ||||||||| ||| ||||||| |||||| ||| |||||||| |||||||||| || | ||||| | |||||||||||    
T  28072713 tttaccaaattatccttattagctattgattagttttaaaagtaatactttggaagtagtgtgaagagtattaattg 28072637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 14286074 - 14286020
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaa 206  Q
    |||| |||| ||| |||||||||||||||||| |||||||| | |||||||||||    
T  14286074 tttatcaaattatccttattaactattggttagttttaaaagttatactttgaaa 14286020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 135
Target Start/End: Original strand, 16463024 - 16463054
Alignment:
Q  105 aagaaagagaattgttattttaccaaattat 135  Q
    |||||||||||||||||||||||||||||||    
T  16463024 aagaaagagaattgttattttaccaaattat 16463054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 16792629 - 16792584
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataat 197  Q
    ||||||||| ||| |||||||||||||||||| |||||||| ||||    
T  16792629 tttaccaaattatccttattaactattggttagttttaaaagtaat 16792584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 17695802 - 17695847
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||| ||||||| |||| |||||| ||||||||||||||||||    
T  17695802 aaatgcagtgattaagagaatgagaatggttattttaccaaattat 17695847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 18719479 - 18719528
Alignment:
Q  189 aaaaataatactttgaaattggtgtgcatagtattaattgaagggcacaa 238  Q
    |||||||||||||||||| | ||||  |||||||||||||||||| ||||    
T  18719479 aaaaataatactttgaaaatagtgtatatagtattaattgaagggtacaa 18719528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 43427265 - 43427309
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||||||    
T  43427265 aaatgcaat-attaaaataaagagaatggttattttaccaaattat 43427309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 45423794 - 45423749
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||| ||||||||||| ||| |||||| |||||||||||||||||    
T  45423794 aaatgaaatgattaaaataaatagaattattattttaccaaattat 45423749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 7028859 - 7028903
Alignment:
Q  189 aaaaataatactttgaaattggtgtgcatagtattaattgaaggg 233  Q
    |||||||||||||||||| | ||||  ||||||||||||||||||    
T  7028859 aaaaataatactttgaaagtagtgtatatagtattaattgaaggg 7028903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 45301886 - 45301822
Alignment:
Q  174 ctattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaagggcacaa 238  Q
    |||||||||| |||||||| ||||||||| ||| | |||| || |||||||||||| ||| ||||    
T  45301886 ctattggttagttttaaaagtaatactttaaaagtagtgtacacagtattaattgatgggtacaa 45301822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 50249453 - 50249367
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaagggcacaa 238  Q
    ||||||||| ||| ||||||||||||||||||||||||||| |||||||||| || | ||||||| ||||||||||| |||| ||||    
T  50249453 tttaccaaattatccttattaactattggttaattttaaaagtaatactttggaagtagtgtgcaaagtattaattggagggtacaa 50249367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 233
Target Start/End: Original strand, 14373421 - 14373502
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaaggg 233  Q
    ||||||||| ||| |||||||||||||||||| |||||||||||||||||||||| | ||||||| | ||||||||| ||||    
T  14373421 tttaccaaattatccttattaactattggttagttttaaaaataatactttgaaagtagtgtgcagattattaattggaggg 14373502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 12591090 - 12591176
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaagggcacaa 238  Q
    ||||||||| ||| |||||||||||||||||| |||||||||||||| ||||||| | ||||||  ||||||||||| |||| ||||    
T  12591090 tttaccaaattatccttattaactattggttagttttaaaaataataatttgaaagtagtgtgctgagtattaattggagggtacaa 12591176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 34032054 - 34032100
Alignment:
Q  89 aaaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  34032054 aaaatgcaatgattaaaagaaagagaatggttattttaccaaattat 34032100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 50249486 - 50249441
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  50249486 aaatgcaatgattaaaagaaagagaatggttattttaccaaattat 50249441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 34032088 - 34032164
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattg 228  Q
    ||||||||| ||| |||||||||||||||||| |||||||| |||||||||| || | | ||||| |||||||||||    
T  34032088 tttaccaaattatccttattaactattggttagttttaaaagtaatactttggaagtagcgtgcaaagtattaattg 34032164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 26352089 - 26352175
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaagggcacaa 238  Q
    ||||||||| ||| |||||| ||||||||||| |||||||| ||||||||||||| | | ||||  ||||||||||| |||| ||||    
T  26352089 tttaccaaattatccttattgactattggttagttttaaaagtaatactttgaaagtagcgtgctgagtattaattggagggtacaa 26352175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 233
Target Start/End: Original strand, 12484636 - 12484717
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaaggg 233  Q
    ||||||||| ||| |||||| ||||||||||| |||||||| |||||||||| || | |||||| || ||||||||| ||||    
T  12484636 tttaccaaattatccttattgactattggttagttttaaaagtaatactttggaagtagtgtgcctaatattaattggaggg 12484717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 14373388 - 14373433
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||    
T  14373388 aaatgcaatgattaaaagaaaaagaatggttattttaccaaattat 14373433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 30293512 - 30293467
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||    
T  30293512 aaatgcaatgattaaaagaaagataatggttattttaccaaattat 30293467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 34047208 - 34047253
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||||||||||||||||||||||||||  |||||||||||||||||    
T  34047208 aaatgcaatgattaaaagaaagagaatgattattttaccaaattat 34047253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 39125779 - 39125734
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||||||||||||||||||||||||||||||||||| | |||||||    
T  39125779 aaatgcaatgattaaaagaaagagaattgttatttttctaaattat 39125734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 44257656 - 44257701
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||||||||||||||||||||||||||  |||||||||||||||||    
T  44257656 aaatgcaatgattaaaagaaagagaataattattttaccaaattat 44257701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 52023948 - 52023993
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||||||||||||||||||||||||||  |||||||||||||||||    
T  52023948 aaatgcaatgattaaaagaaagagaatgattattttaccaaattat 52023993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 27721101 - 27721015
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaagggcacaa 238  Q
    |||| |||| ||| |||||||||||||| ||| |||||||| |||||||||| || | ||||||  ||||||||||| |||| ||||    
T  27721101 tttatcaaattatccttattaactattgattagttttaaaagtaatactttggaagtagtgtgctgagtattaattggagggtacaa 27721015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 44557033 - 44557079
Alignment:
Q  89 aaaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||||||| | |||||||||||||||| |||||||||||||||||||    
T  44557033 aaaatgcattaattaaaagaaagagaaatgttattttaccaaattat 44557079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 14593320 - 14593365
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||||||||||||| ||||| ||| ||||||||||||||||||    
T  14593320 aaatgcaatgattaaaaaaaagataatggttattttaccaaattat 14593365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 26352056 - 26352101
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||||| |||||||||||||||||  |||||||||||||||||    
T  26352056 aaatgcaattattaaaagaaagagaatgtttattttaccaaattat 26352101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 44257689 - 44257765
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattg 228  Q
    ||||||||| ||| |||||||| ||||||||| |||||||| ||||| |||| || | ||||| | |||||||||||    
T  44257689 tttaccaaattatccttattaattattggttagttttaaaagtaatattttggaagtagtgtgtagagtattaattg 44257765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 135
Target Start/End: Original strand, 12591059 - 12591102
Alignment:
Q  92 atgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||||||||||||||||| |||  |||||||||||||||||    
T  12591059 atgcaatgattaaaagaaagataatgattattttaccaaattat 12591102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 14593353 - 14593404
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttg 203  Q
    ||||||||| ||| ||||||||||||| |||| |||||||| ||||||||||    
T  14593353 tttaccaaattatccttattaactatttgttagttttaaaagtaatactttg 14593404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 41857457 - 41857382
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaatt 227  Q
    |||| |||| |||||||  ||| ||||||||| |||||||| ||||| |||| || | ||||||||||||||||||    
T  41857457 tttatcaaattattcttcgtaattattggttagttttaaaagtaataatttggaagtagtgtgcatagtattaatt 41857382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 129
Target Start/End: Complemental strand, 11799642 - 11799608
Alignment:
Q  95 caatgattaaaagaaagagaattgttattttacca 129  Q
    ||||| |||||||||||||||||||||||||||||    
T  11799642 caatgtttaaaagaaagagaattgttattttacca 11799608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 25487231 - 25487145
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaagggcacaa 238  Q
    ||||||||| ||| | ||||| ||||| |||| ||| |||| |||||||||| || | ||||||| ||||||||||| |||| ||||    
T  25487231 tttaccaaattatccatattagctattagttagtttaaaaattaatactttggaagtagtgtgcagagtattaattggagggtacaa 25487145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 27721135 - 27721089
Alignment:
Q  89 aaaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||||||||||||||||||| ||||  |||||||| ||||||||    
T  27721135 aaaatgcaatgattaaaagaaagtgaatgattattttatcaaattat 27721089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 27721250 - 27721204
Alignment:
Q  89 aaaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||||||||| |||||||||||||||||  |||||||| ||||||||    
T  27721250 aaaatgcaataattaaaagaaagagaatgattattttatcaaattat 27721204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 30293479 - 30293397
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataat-actttgaaattggtgtgcatagtattaattgaaggg 233  Q
    ||||||||| ||| |||||||| ||||||||| |||| ||| |||| |||||| || | ||||||| ||||||||||| ||||    
T  30293479 tttaccaaattatccttattaattattggttagtttttaaagtaattactttggaagtagtgtgcagagtattaattgtaggg 30293397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 5672 - 5717
Alignment:
Q  92 atgcaatgattaaaagaaagagaattgttattttaccaaattattc 137  Q
    |||||||||||| || ||||||||| || |||||||||||||||||    
T  5672 atgcaatgattagaataaagagaatagtaattttaccaaattattc 5717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 8894980 - 8895025
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||| | |||||||||||||||  |||||||||||||||||||    
T  8894980 aaatgcattaattaaaagaaagagagatgttattttaccaaattat 8895025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 12484603 - 12484648
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||| ||| |||||||||||||| |||||| |||||||||||||||    
T  12484603 aaatacaaagattaaaagaaagataattgtcattttaccaaattat 12484648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 16757239 - 16757288
Alignment:
Q  189 aaaaataatactttgaaattggtgtgcatagtattaattgaagggcacaa 238  Q
    |||||||||||||||||| | ||||  |||||||||||||||||| ||||    
T  16757239 aaaaataatactttgaaagttgtgtatatagtattaattgaagggtacaa 16757288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 11449678 - 11449710
Alignment:
Q  105 aagaaagagaattgttattttaccaaattattc 137  Q
    |||||||| ||||||||||||||||||||||||    
T  11449678 aagaaagaaaattgttattttaccaaattattc 11449710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 49402879 - 49402955
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattg 228  Q
    ||||| ||| ||| |||||||||||||| ||| |||||||| |||||||||| || |  |||||| | |||||||||    
T  49402879 tttactaaattatccttattaactattgattagttttaaaagtaatactttggaagtaatgtgcaaaatattaattg 49402955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 37559553 - 37559629
Alignment:
Q  162 tattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaagggcacaa 238  Q
    |||||||||||||||||||||| |||||||| ||||||||||||| | ||||||| ||||||||||| |||| ||||    
T  37559553 tattcttattaactattggttagttttaaaagtaatactttgaaaatagtgtgcagagtattaattggagggtacaa 37559629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 152 - 233
Target Start/End: Original strand, 39765870 - 39765951
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaaggg 233  Q
    ||||||||| ||| |||||||||||||||||| |||||||| |||||||||| || | ||||||| ||||||||||| ||||    
T  39765870 tttaccaaattatccttattaactattggttagttttaaaagtaatactttggaagtagtgtgcagagtattaattggaggg 39765951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 15160456 - 15160542
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaagggcacaa 238  Q
    ||||||||| ||| |||||||||||||||||| |||||||| ||||| |||| || | ||||||| ||||||||||| |||| ||||    
T  15160456 tttaccaaattatccttattaactattggttagttttaaaagtaatattttggaagtagtgtgcagagtattaattggagggtacaa 15160542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 15160423 - 15160468
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  15160423 aaatgcaatgattaaaagaaagagaatggttattttaccaaattat 15160468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 43724559 - 43724512
Alignment:
Q  89 aaaatgcaatgattaaaagaaagagaattgttattttaccaaattatt 136  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||    
T  43724559 aaaatgcaatgattaaaagaaagagaatgattattttaccaaattatt 43724512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 396191 - 396236
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||||||||||||||||||||||||||  |||||||||||||||||    
T  396191 aaatgcaatgattaaaagaaagagaatgattattttaccaaattat 396236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 17656050 - 17655969
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaaggg 233  Q
    ||||||||| ||| |||||||  ||||||||| |||||||| |||||||||| || | ||||||| ||||||||||| ||||    
T  17656050 tttaccaaattatccttattagttattggttagttttaaaagtaatactttgcaagtagtgtgcagagtattaattggaggg 17655969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 43724525 - 43724449
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattg 228  Q
    ||||||||| |||| ||||||||||||||||| |||||||| ||||| | || || | ||||||| |||||||||||    
T  43724525 tttaccaaattatttttattaactattggttagttttaaaagtaatattatggaagtagtgtgcagagtattaattg 43724449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 396224 - 396301
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattga 229  Q
    ||||||||| ||| |||||||||||||||||| |||||||| ||||||| || ||    |||||| ||||||||||||    
T  396224 tttaccaaattatccttattaactattggttagttttaaaagtaatactatggaagcaatgtgcaaagtattaattga 396301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 1511677 - 1511632
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||||||||||||| ||||||||||||||| ||||||| |||||||    
T  1511677 aaatgcaatgattataagaaagagaattgtcattttactaaattat 1511632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 39765837 - 39765882
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||| ||||||||||||||||||||||  |||||||||||||||||    
T  39765837 aaatacaatgattaaaagaaagagaatgcttattttaccaaattat 39765882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 40362578 - 40362497
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaaggg 233  Q
    ||||||||| |||  ||||||||||||||||| |||||||| ||||| |||| |  | ||||||| ||||||||||| ||||    
T  40362578 tttaccaaattatctttattaactattggttagttttaaaagtaatattttggacgtagtgtgcagagtattaattggaggg 40362497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 12339898 - 12339853
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattattc 137  Q
    |||||||||||||||||||  ||||||||||||||||| |||||||||    
T  12339898 aaatgcaatgattaaaaga--gagaattgttattttacaaaattattc 12339853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 40399844 - 40399889
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||| | |||||||||||||||  |||||||||||||||||||    
T  40399844 aaatgcattaattaaaagaaagagatatgttattttaccaaattat 40399889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 41679498 - 41679453
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||| | |||||||||||||||  |||||||||||||||||||    
T  41679498 aaatgcattaattaaaagaaagagaggtgttattttaccaaattat 41679453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 42286051 - 42285970
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaaggg 233  Q
    ||||||||| ||| ||||||||||||||||   |||||||| |||||||||| || | ||||||||||||||||||||||||    
T  42286051 tttaccaaattatccttattaactattggtcggttttaaaagtaatactttggaagttgtgtgcatagtattaattgaaggg 42285970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 18292478 - 18292402
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattg 228  Q
    ||||||||| ||| |||||||||||||||||| |||||||| |||||||||| || | ||||||| |||||||||||    
T  18292478 tttaccaaattatccttattaactattggttagttttaaaagtaatactttggaagtagtgtgcagagtattaattg 18292402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 31883927 - 31883851
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattg 228  Q
    ||||||||| ||| |||||||||||||||||| |||||||| |||||||||| || | ||||||| |||||||||||    
T  31883927 tttaccaaattatccttattaactattggttagttttaaaagtaatactttggaagtagtgtgcagagtattaattg 31883851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 47187839 - 47187793
Alignment:
Q  89 aaaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  47187839 aaaatgcattgattaaaagaaagagaattgttattttaccaaattat 47187793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 6747402 - 6747357
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  6747402 aaatgcaatgattaaaagaaagagaatggttattttaccaaattat 6747357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 12977661 - 12977706
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  12977661 aaatgcaatgattaaaagaaagagaatggttattttaccaaattat 12977706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 12983119 - 12983164
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  12983119 aaatgcaatgattaaaagaaagagaatggttattttaccaaattat 12983164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 18292511 - 18292466
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  18292511 aaatgcaatgattaaaagaaagagaatggttattttaccaaattat 18292466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 37502462 - 37502381
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaaggg 233  Q
    ||||||||| ||| |||||||||||||||||| |||||||| ||||| |||| || | ||||||| ||||||||||| ||||    
T  37502462 tttaccaaattatccttattaactattggttagttttaaaagtaatattttggaagtagtgtgcagagtattaattggaggg 37502381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 42286084 - 42286039
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  42286084 aaatgcaatgattaaaataaagagaattgttattttaccaaattat 42286039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 2297186 - 2297110
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattg 228  Q
    ||||||||| |||  ||||||||||||||||| |||||||||||||| |||| || | ||||||| |||||||||||    
T  2297186 tttaccaaattatctttattaactattggttagttttaaaaataatattttggaagtagtgtgcagagtattaattg 2297110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 12977694 - 12977770
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattg 228  Q
    ||||||||| ||| ||||||||||||| |||| |||||||| |||||||||| || | ||||||| |||||||||||    
T  12977694 tttaccaaattatccttattaactattagttagttttaaaagtaatactttggaagtagtgtgcagagtattaattg 12977770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 31929882 - 31929954
Alignment:
Q  166 cttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaagggcacaa 238  Q
    |||||||||||||||||| |||||||| |||||||||| || | ||||||| ||||||||||| |||| ||||    
T  31929882 cttattaactattggttagttttaaaagtaatactttggaagtagtgtgcaaagtattaattggagggtacaa 31929954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 44567049 - 44567125
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattg 228  Q
    |||| |||| ||| |||||||||||||||||| |||||||| |||||||||| || | ||||||| |||||||||||    
T  44567049 tttatcaaattatccttattaactattggttagttttaaaagtaatactttggaagtagtgtgcaaagtattaattg 44567125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 715871 - 715957
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaagggcacaa 238  Q
    ||||||||| ||| ||||||| |||||||||| |||||||| |||||||||| || | ||| ||| ||||||||||| |||| ||||    
T  715871 tttaccaaattatccttattagctattggttagttttaaaagtaatactttggaagtagtgagcagagtattaattggagggtacaa 715957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 6747369 - 6747283
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaagggcacaa 238  Q
    ||||||||| ||| ||||||||| |||||||| |||||||  |||||||||| || | ||||||| ||||||||||| |||| ||||    
T  6747369 tttaccaaattatccttattaaccattggttagttttaaatgtaatactttggaagtagtgtgcagagtattaattggagggtacaa 6747283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 18270721 - 18270635
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaagggcacaa 238  Q
    ||||||||| ||| |||||||||||||| ||| |||||||| |||||||||| || | ||||||| | ||||||||| |||| ||||    
T  18270721 tttaccaaattatccttattaactattgattagttttaaaagtaatactttggaagtagtgtgcagaatattaattggagggtacaa 18270635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 2297219 - 2297174
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||||||||||||||||||||||||||  |||||||||||||||||    
T  2297219 aaatgcaatgattaaaagaaagagaatgattattttaccaaattat 2297174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 31883960 - 31883915
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||||||||||||||||||||||||||  |||||||||||||||||    
T  31883960 aaatgcaatgattaaaagaaagagaatgattattttaccaaattat 31883915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 34274970 - 34274925
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||    
T  34274970 aaatacaatgattaaaagaaagagaatggttattttaccaaattat 34274925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 12983152 - 12983203
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttg 203  Q
    ||||||||| ||| |||||||||||||||||| |||||||| ||||||||||    
T  12983152 tttaccaaattatccttattaactattggttagttttaaaagtaatactttg 12983203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 34274937 - 34274851
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaagggcacaa 238  Q
    ||||||||| |||  ||||||||||||||||| |||||||| |||||||||| |  | ||||| | ||||||||||| |||| ||||    
T  34274937 tttaccaaattatctttattaactattggttagttttaaaagtaatactttggatgtagtgtgtagagtattaattggagggtacaa 34274851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 715838 - 715883
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||||||||||||||||||| |||  |||||||||||||||||    
T  715838 aaatgcaatgattaaaagaaagaaaatcattattttaccaaattat 715883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 18270754 - 18270709
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||||||||||||||||| |||||  |||||||||||||||||    
T  18270754 aaatgcaatgattaaaagaaatagaatgattattttaccaaattat 18270709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 31196676 - 31196627
Alignment:
Q  189 aaaaataatactttgaaattggtgtgcatagtattaattgaagggcacaa 238  Q
    |||||||||||||||||||| ||||  ||| |||||||||||||||||||    
T  31196676 aaaaataatactttgaaattagtgtatataatattaattgaagggcacaa 31196627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 37502495 - 37502450
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||| ||||||||||||||||||||||  |||||||||||||||||    
T  37502495 aaatacaatgattaaaagaaagagaatgattattttaccaaattat 37502450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 40339645 - 40339600
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||| | |||||||||||||||| |||||||||||||||||||    
T  40339645 aaatgcattaattaaaagaaagagaaatgttattttaccaaattat 40339600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 40927303 - 40927254
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactt 201  Q
    ||||||||| ||| |||||||||||||||||| |||||||| ||||||||    
T  40927303 tttaccaaattatccttattaactattggttagttttaaaagtaatactt 40927254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 7900116 - 7900070
Alignment:
Q  89 aaaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||| ||||||||||| ||| |||||| ||||||||||||||||||    
T  7900116 aaaatacaatgattaaatgaatgagaatagttattttaccaaattat 7900070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 19303358 - 19303404
Alignment:
Q  89 aaaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||||||| | |||||||||||||||| ||||||||||| |||||||    
T  19303358 aaaatgcattaattaaaagaaagagaaatgttattttactaaattat 19303404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 25441015 - 25440929
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaagggcacaa 238  Q
    ||||| ||| ||| ||||||| |||| | ||| |||||||| |||||||||| || | ||||||| ||||||||||| |||| ||||    
T  25441015 tttactaaattatccttattagctatcgattagttttaaaagtaatactttggaagtagtgtgcagagtattaattggagggtacaa 25440929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 4268839 - 4268794
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||| | |||||||||||||||  |||||||||||||||||||    
T  4268839 aaatgcattaattaaaagaaagagagatgttattttaccaaattat 4268794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 25441048 - 25441003
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||| |||||||||||||||||||||  ||||||||| |||||||    
T  25441048 aaatgtaatgattaaaagaaagagaatgattattttactaaattat 25441003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 31929834 - 31929875
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaa 131  Q
    ||||||||||||||| |||||||||||  |||||||||||||    
T  31929834 aaatgcaatgattaacagaaagagaatgtttattttaccaaa 31929875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 18528516 - 18528572
Alignment:
Q  172 aactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattg 228  Q
    ||||||||||||  ||||||| |||||||||| || | ||||||| |||||||||||    
T  18528516 aactattggttagctttaaaagtaatactttggaagtagtgtgcagagtattaattg 18528572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 152 - 233
Target Start/End: Original strand, 43584386 - 43584467
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaaggg 233  Q
    ||||||||| ||| ||||||||||||||||||||||||||| ||||| |||| || | ||||||| ||||||||||| ||||    
T  43584386 tttaccaaattatccttattaactattggttaattttaaaagtaatattttggaagtagtgtgcagagtattaattggaggg 43584467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 7317171 - 7317085
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaagggcacaa 238  Q
    ||||||||| ||| |||||||||||||| ||| |||||||| ||||||||||||| | || |||| ||||||||||| |||| ||||    
T  7317171 tttaccaaattatccttattaactattgattagttttaaaagtaatactttgaaaatagtttgcagagtattaattggagggtacaa 7317085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 10344942 - 10345028
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaagggcacaa 238  Q
    ||||||||| ||| ||||||| |||||||||| |||||||| |||||||||| || | ||||||| ||||||||||| |||| ||||    
T  10344942 tttaccaaattatccttattagctattggttagttttaaaagtaatactttggaagtagtgtgcagagtattaattggagggtacaa 10345028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 35765876 - 35765922
Alignment:
Q  89 aaaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  35765876 aaaatgcaatgattaaaagaaagagaatggttattttaccaaattat 35765922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 7317204 - 7317159
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  7317204 aaatgcaatgattaaaagaaagagaatggttattttaccaaattat 7317159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 10344909 - 10344954
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  10344909 aaatgcaatgattaaaagaaagagaatggttattttaccaaattat 10344954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 152 - 233
Target Start/End: Original strand, 25362810 - 25362891
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaaggg 233  Q
    ||||||||| ||| ||||||||||||||| || |||||||| |||||||||| || | ||||||| ||||||||||| ||||    
T  25362810 tttaccaaaatatccttattaactattggctagttttaaaagtaatactttggaagtagtgtgcagagtattaattggaggg 25362891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 32158718 - 32158673
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  32158718 aaatgcaatgattaaaagaaagagaatggttattttaccaaattat 32158673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 35765910 - 35765986
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattg 228  Q
    ||||||||| ||| |||||||||||||||||| |||||||| |||||||||  |||| ||||| | |||||||||||    
T  35765910 tttaccaaattatccttattaactattggttagttttaaaagtaatactttagaattagtgtgtagagtattaattg 35765986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 3024908 - 3024953
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||    
T  3024908 aaatgcaacgattaaaagaaagagaatggttattttaccaaattat 3024953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 3024941 - 3025027
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaagggcacaa 238  Q
    ||||||||| ||| ||| ||||||||| |||| |||||||| |||||||||| || |  |||||| ||||||||||| |||| ||||    
T  3024941 tttaccaaattatcctttttaactattagttagttttaaaagtaatactttggaagtaatgtgcagagtattaattggagggtacaa 3025027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 25362777 - 25362818
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaa 131  Q
    ||||||||||||||||||||||||||| ||| ||||||||||    
T  25362777 aaatgcaatgattaaaagaaagagaatggttgttttaccaaa 25362818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 43584353 - 43584398
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||| ||||||||||||||||||||||  |||||||||||||||||    
T  43584353 aaatacaatgattaaaagaaagagaatgattattttaccaaattat 43584398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 13974460 - 13974415
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||| | |||||||||||||||  |||||||||||||||||||    
T  13974460 aaatgcattaattaaaagaaagagaggtgttattttaccaaattat 13974415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 34534465 - 34534416
Alignment:
Q  189 aaaaataatactttgaaattggtgtgcatagtattaattgaagggcacaa 238  Q
    |||||||||| |||| || | |||||||||||||||||||||||| ||||    
T  34534465 aaaaataatattttggaagtagtgtgcatagtattaattgaagggtacaa 34534416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 3820 - 3906
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaagggcacaa 238  Q
    ||||||||| ||| ||||||| |||||||||| |||||||| |||||||||| || | ||||||| ||||||||||| |||| ||||    
T  3820 tttaccaaattatccttattagctattggttagttttaaaagtaatactttggaagtagtgtgcagagtattaattggagggtacaa 3906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 3787 - 3832
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||||||||||||||||||| |||  |||||||||||||||||    
T  3787 aaatgcaatgattaaaagaaagaaaatgattattttaccaaattat 3832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 4850472 - 4850517
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  4850472 aaatgcaatgattaaaagaaagagaatggttattttaccaaattat 4850517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 29400121 - 29400076
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  29400121 aaatgcaatgattaaaagaaagagaatggttattttaccaaattat 29400076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 4850505 - 4850581
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattg 228  Q
    ||||||||| ||| |||||||||||||||||| |||||||| ||||| |||| || | ||||||| |||||||||||    
T  4850505 tttaccaaattatccttattaactattggttagttttaaaagtaatattttggaagtagtgtgcagagtattaattg 4850581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 231
Target Start/End: Complemental strand, 19689473 - 19689394
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaattggtgtgcatagtattaattgaag 231  Q
    ||||||||| |||| ||||||||||||| ||| |||||||| ||||||||| ||| | ||||||  ||||||||||||||    
T  19689473 tttaccaaattattattattaactattgtttagttttaaaagtaatactttaaaagtagtgtgctgagtattaattgaag 19689394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 19689507 - 19689460
Alignment:
Q  89 aaaatgcaatgattaaaagaaagagaattgttattttaccaaattatt 136  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||    
T  19689507 aaaatgcaatgattaaaagaaagataatggttattttaccaaattatt 19689460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 32429463 - 32429418
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    |||||||||||||||||||||||||||  |||||||||||||||||    
T  32429463 aaatgcaatgattaaaagaaagagaatgattattttaccaaattat 32429418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 13503810 - 13503855
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||| | |||||||||||||||| |||||||||||||||||||    
T  13503810 aaatgcattaattaaaagaaagagaaatgttattttaccaaattat 13503855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 135
Target Start/End: Original strand, 13597932 - 13597965
Alignment:
Q  102 taaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||||||||||||||||||||||||||||||    
T  13597932 taaaagaaagagaattgttattttaccaaattat 13597965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 1502719 - 1502764
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||| ||||||||||||| |||  |||||||||||||||||||    
T  1502719 aaatgcattgattaaaagaaatagagatgttattttaccaaattat 1502764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 13011314 - 13011359
Alignment:
Q  90 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 135  Q
    ||||||| | |||||||||||||||  |||||||||||||||||||    
T  13011314 aaatgcattaattaaaagaaagagagatgttattttaccaaattat 13011359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 19689287 - 19689250
Alignment:
Q  166 cttattaactattggttaattttaaaaataatactttg 203  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  19689287 cttattaactattggttagttttaaaagtaatactttg 19689250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 32429430 - 32429351
Alignment:
Q  152 tttaccaaactattcttattaactattggttaattttaaa---aataatactttgaaattggtgtgcatagtattaattg 228  Q
    ||||||||| |||  ||||||||||||||||| |||||||   |||| |||||||||| | ||||||| | |||||||||    
T  32429430 tttaccaaattatctttattaactattggttagttttaaaagtaatactactttgaaagtagtgtgcagaatattaattg 32429351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 9877 - 9913
Alignment:
Q  18 gtttcaaaatgattatcgtttaaagtttttacacata 54  Q
    |||||||||||| | ||||||||||||||||||||||    
T  9877 gtttcaaaatgaatgtcgtttaaagtttttacacata 9913  T

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