View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_195 (Length: 312)
Name: NF10481A_low_195
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_195 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 6915954 - 6915655
Alignment:
| Q |
1 |
gggctttccaactgtagcatcaactccaaactccatcttaatgcatttaacataaatatctaagtgtagttctcccattccagaaatgattgtttgccca |
100 |
Q |
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| T |
6915954 |
gggctttccaactgtagcatcaaccccatactccatcttaatgcgtttaacataaatatctaagtgtagttctcccattccagaaatgattgtttgccca |
6915855 |
T |
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| Q |
101 |
ctctctgggtccaagctaacacggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatcttttgagactggctgta |
200 |
Q |
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| T |
6915854 |
ctctctgggtccaagctaacacgaaaagtaggatcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatcttttgagactggctgta |
6915755 |
T |
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| Q |
201 |
cagctaatgacgtcacgggctcaggaacattcatagaagtcattgtgtatttaaccgacccatcagtaaatgtatcgccggatgcacaatcaacaccaaa |
300 |
Q |
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| T |
6915754 |
cagctaatgacatcacgggctcaggaacattcatagaagtcattgtgtatttaaccgacccatcagtaaatgtatcgctggatgcacaatcaacaccaaa |
6915655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 172 - 276
Target Start/End: Original strand, 15040241 - 15040345
Alignment:
| Q |
172 |
ccctccagaatcttttgagactggctgtacagctaatgacgtcacgggctcaggaacattcatagaagtcattgtgtatttaaccgacccatcagtaaat |
271 |
Q |
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| T |
15040241 |
ccctccagaatcttttgagactggctgtacagctaatgacatcacaggctcaggaacactcattgaagtcattgtatatttaacagacccatcagtaaaa |
15040340 |
T |
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| Q |
272 |
gtatc |
276 |
Q |
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| T |
15040341 |
gtatc |
15040345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 95 - 168
Target Start/End: Original strand, 15040064 - 15040137
Alignment:
| Q |
95 |
tgcccactctctgggtccaagctaacacggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaa |
168 |
Q |
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| T |
15040064 |
tgcccactctctgggtccaagccaacacggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaa |
15040137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 15039923 - 15039977
Alignment:
| Q |
39 |
taatgcatttaacataaatatctaagtgtagttctcccattccagaaatgattgt |
93 |
Q |
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| T |
15039923 |
taatgcgttcaacatagatatctaagtgcagttctcccattccagaaataattgt |
15039977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 43895529 - 43895598
Alignment:
| Q |
123 |
ggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatcttttgagac |
192 |
Q |
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| T |
43895529 |
ggaaagtaggatcctttctttgaaaaccattcaaagcagttgaaaattgccctccagaatcttttgagac |
43895598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 44305953 - 44306022
Alignment:
| Q |
123 |
ggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatcttttgagac |
192 |
Q |
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| T |
44305953 |
ggaaagtaggatcctttctttgaaaaccattcaaagcacttgaaaattgccctccagaatcttttgagac |
44306022 |
T |
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